Struct consalign::AlignfoldScores
source · pub struct AlignfoldScores {Show 31 fields
pub hairpin_scores_len: [f32; 31],
pub bulge_scores_len: [f32; 30],
pub interior_scores_len: [f32; 29],
pub interior_scores_symmetric: [f32; 15],
pub interior_scores_asymmetric: [f32; 28],
pub stack_scores: [[[[f32; 4]; 4]; 4]; 4],
pub terminal_mismatch_scores: [[[[f32; 4]; 4]; 4]; 4],
pub dangling_scores_left: [[[f32; 4]; 4]; 4],
pub dangling_scores_right: [[[f32; 4]; 4]; 4],
pub helix_close_scores: [[f32; 4]; 4],
pub basepair_scores: [[f32; 4]; 4],
pub interior_scores_explicit: [[f32; 4]; 4],
pub bulge_scores_0x1: [f32; 4],
pub interior_scores_1x1: [[f32; 4]; 4],
pub multibranch_score_base: f32,
pub multibranch_score_basepair: f32,
pub multibranch_score_unpair: f32,
pub external_score_basepair: f32,
pub external_score_unpair: f32,
pub match2match_score: f32,
pub match2insert_score: f32,
pub insert_extend_score: f32,
pub init_match_score: f32,
pub init_insert_score: f32,
pub insert_scores: [f32; 4],
pub match_scores: [[f32; 4]; 4],
pub hairpin_scores_len_cumulative: [f32; 31],
pub bulge_scores_len_cumulative: [f32; 30],
pub interior_scores_len_cumulative: [f32; 29],
pub interior_scores_symmetric_cumulative: [f32; 15],
pub interior_scores_asymmetric_cumulative: [f32; 28],
}
Fields§
§hairpin_scores_len: [f32; 31]
§bulge_scores_len: [f32; 30]
§interior_scores_len: [f32; 29]
§interior_scores_symmetric: [f32; 15]
§interior_scores_asymmetric: [f32; 28]
§stack_scores: [[[[f32; 4]; 4]; 4]; 4]
§terminal_mismatch_scores: [[[[f32; 4]; 4]; 4]; 4]
§dangling_scores_left: [[[f32; 4]; 4]; 4]
§dangling_scores_right: [[[f32; 4]; 4]; 4]
§helix_close_scores: [[f32; 4]; 4]
§basepair_scores: [[f32; 4]; 4]
§interior_scores_explicit: [[f32; 4]; 4]
§bulge_scores_0x1: [f32; 4]
§interior_scores_1x1: [[f32; 4]; 4]
§multibranch_score_base: f32
§multibranch_score_basepair: f32
§multibranch_score_unpair: f32
§external_score_basepair: f32
§external_score_unpair: f32
§match2match_score: f32
§match2insert_score: f32
§insert_extend_score: f32
§init_match_score: f32
§init_insert_score: f32
§insert_scores: [f32; 4]
§match_scores: [[f32; 4]; 4]
§hairpin_scores_len_cumulative: [f32; 31]
§bulge_scores_len_cumulative: [f32; 30]
§interior_scores_len_cumulative: [f32; 29]
§interior_scores_symmetric_cumulative: [f32; 15]
§interior_scores_asymmetric_cumulative: [f32; 28]
Implementations§
source§impl AlignfoldScores
impl AlignfoldScores
pub fn load_trained_scores() -> AlignfoldScores
source§impl AlignfoldScores
impl AlignfoldScores
pub fn load_trained_scores_randinit() -> AlignfoldScores
source§impl AlignfoldScores
impl AlignfoldScores
pub fn new(init_val: f32) -> AlignfoldScores
pub fn len(&self) -> usize
pub fn is_empty(&self) -> bool
pub fn update_regularizers( &self, regularizers: &mut ArrayBase<OwnedRepr<f32>, Dim<[usize; 1]>> )
pub fn update<T>( &mut self, train_data: &[TrainDatum<T>], regularizers: &mut ArrayBase<OwnedRepr<f32>, Dim<[usize; 1]>> )where T: HashIndex,
pub fn mirror(&mut self)
pub fn accumulate(&mut self)
pub fn get_grad<T>( &self, train_data: &[TrainDatum<T>], regularizers: &ArrayBase<OwnedRepr<f32>, Dim<[usize; 1]>> ) -> ArrayBase<OwnedRepr<f32>, Dim<[usize; 1]>>where T: HashIndex,
pub fn get_cost<T>( &self, train_data: &[TrainDatum<T>], regularizers: &ArrayBase<OwnedRepr<f32>, Dim<[usize; 1]>> ) -> f32where T: HashIndex,
pub fn rand_init(&mut self)
pub fn transfer(&mut self)
Trait Implementations§
source§impl Clone for AlignfoldScores
impl Clone for AlignfoldScores
source§fn clone(&self) -> AlignfoldScores
fn clone(&self) -> AlignfoldScores
Returns a copy of the value. Read more
1.0.0 · source§fn clone_from(&mut self, source: &Self)
fn clone_from(&mut self, source: &Self)
Performs copy-assignment from
source
. Read moreAuto Trait Implementations§
impl RefUnwindSafe for AlignfoldScores
impl Send for AlignfoldScores
impl Sync for AlignfoldScores
impl Unpin for AlignfoldScores
impl UnwindSafe for AlignfoldScores
Blanket Implementations§
§impl<SS, SP> SupersetOf<SS> for SPwhere
SS: SubsetOf<SP>,
impl<SS, SP> SupersetOf<SS> for SPwhere SS: SubsetOf<SP>,
§fn to_subset(&self) -> Option<SS>
fn to_subset(&self) -> Option<SS>
The inverse inclusion map: attempts to construct
self
from the equivalent element of its
superset. Read more§fn is_in_subset(&self) -> bool
fn is_in_subset(&self) -> bool
Checks if
self
is actually part of its subset T
(and can be converted to it).§fn to_subset_unchecked(&self) -> SS
fn to_subset_unchecked(&self) -> SS
Use with care! Same as
self.to_subset
but without any property checks. Always succeeds.§fn from_subset(element: &SS) -> SP
fn from_subset(element: &SS) -> SP
The inclusion map: converts
self
to the equivalent element of its superset.