Struct consalign::AlignfoldScores

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pub struct AlignfoldScores {
Show 31 fields
    pub hairpin_scores_len: [f32; 31],
    pub bulge_scores_len: [f32; 30],
    pub interior_scores_len: [f32; 29],
    pub interior_scores_symmetric: [f32; 15],
    pub interior_scores_asymmetric: [f32; 28],
    pub stack_scores: [[[[f32; 4]; 4]; 4]; 4],
    pub terminal_mismatch_scores: [[[[f32; 4]; 4]; 4]; 4],
    pub dangling_scores_left: [[[f32; 4]; 4]; 4],
    pub dangling_scores_right: [[[f32; 4]; 4]; 4],
    pub helix_close_scores: [[f32; 4]; 4],
    pub basepair_scores: [[f32; 4]; 4],
    pub interior_scores_explicit: [[f32; 4]; 4],
    pub bulge_scores_0x1: [f32; 4],
    pub interior_scores_1x1: [[f32; 4]; 4],
    pub multibranch_score_base: f32,
    pub multibranch_score_basepair: f32,
    pub multibranch_score_unpair: f32,
    pub external_score_basepair: f32,
    pub external_score_unpair: f32,
    pub match2match_score: f32,
    pub match2insert_score: f32,
    pub insert_extend_score: f32,
    pub init_match_score: f32,
    pub init_insert_score: f32,
    pub insert_scores: [f32; 4],
    pub match_scores: [[f32; 4]; 4],
    pub hairpin_scores_len_cumulative: [f32; 31],
    pub bulge_scores_len_cumulative: [f32; 30],
    pub interior_scores_len_cumulative: [f32; 29],
    pub interior_scores_symmetric_cumulative: [f32; 15],
    pub interior_scores_asymmetric_cumulative: [f32; 28],

}

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§hairpin_scores_len: [f32; 31]§bulge_scores_len: [f32; 30]§interior_scores_len: [f32; 29]§interior_scores_symmetric: [f32; 15]§interior_scores_asymmetric: [f32; 28]§stack_scores: [[[[f32; 4]; 4]; 4]; 4]§terminal_mismatch_scores: [[[[f32; 4]; 4]; 4]; 4]§dangling_scores_left: [[[f32; 4]; 4]; 4]§dangling_scores_right: [[[f32; 4]; 4]; 4]§helix_close_scores: [[f32; 4]; 4]§basepair_scores: [[f32; 4]; 4]§interior_scores_explicit: [[f32; 4]; 4]§bulge_scores_0x1: [f32; 4]§interior_scores_1x1: [[f32; 4]; 4]§multibranch_score_base: f32§multibranch_score_basepair: f32§multibranch_score_unpair: f32§external_score_basepair: f32§external_score_unpair: f32§match2match_score: f32§match2insert_score: f32§insert_extend_score: f32§init_match_score: f32§init_insert_score: f32§insert_scores: [f32; 4]§match_scores: [[f32; 4]; 4]§hairpin_scores_len_cumulative: [f32; 31]§bulge_scores_len_cumulative: [f32; 30]§interior_scores_len_cumulative: [f32; 29]§interior_scores_symmetric_cumulative: [f32; 15]§interior_scores_asymmetric_cumulative: [f32; 28]

Implementations§

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impl AlignfoldScores

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pub fn load_trained_scores() -> AlignfoldScores

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impl AlignfoldScores

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pub fn load_trained_scores_randinit() -> AlignfoldScores

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impl AlignfoldScores

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pub fn new(init_val: f32) -> AlignfoldScores

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pub fn len(&self) -> usize

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pub fn is_empty(&self) -> bool

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pub fn update_regularizers( &self, regularizers: &mut ArrayBase<OwnedRepr<f32>, Dim<[usize; 1]>> )

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pub fn update<T>( &mut self, train_data: &[TrainDatum<T>], regularizers: &mut ArrayBase<OwnedRepr<f32>, Dim<[usize; 1]>> )where T: HashIndex,

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pub fn mirror(&mut self)

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pub fn accumulate(&mut self)

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pub fn get_grad<T>( &self, train_data: &[TrainDatum<T>], regularizers: &ArrayBase<OwnedRepr<f32>, Dim<[usize; 1]>> ) -> ArrayBase<OwnedRepr<f32>, Dim<[usize; 1]>>where T: HashIndex,

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pub fn get_cost<T>( &self, train_data: &[TrainDatum<T>], regularizers: &ArrayBase<OwnedRepr<f32>, Dim<[usize; 1]>> ) -> f32where T: HashIndex,

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pub fn rand_init(&mut self)

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pub fn transfer(&mut self)

Trait Implementations§

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impl Clone for AlignfoldScores

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fn clone(&self) -> AlignfoldScores

Returns a copy of the value. Read more
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fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more
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impl Debug for AlignfoldScores

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fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

Formats the value using the given formatter. Read more

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