Enum Patch

pub enum Patch {
    ElongateDomain(usize, bool, isize, bool, usize),
    ShortenDomain(usize, bool, isize, bool, usize),
    AddHelix(Helix),
    DeleteHelix(usize),
    AddStrand(usize, bool, isize),
    DeleteStrand(usize, bool, isize),
    CrossOver(usize, bool, usize, isize, bool),
    MakeBound(usize, bool, isize, usize, bool, isize),
    CutBound(usize, bool, isize, usize, bool, isize),
}

An atomic modification of an existing design. Patches have operation to permute them or undo them.

Variants

ElongateDomain(usize, bool, isize, bool, usize)

ElongateDomain(h, b1, n, b2, n2) elongate the b2 end of domain whose b2 end is (h, b1, n1) by n2 nucleotides

ShortenDomain(usize, bool, isize, bool, usize)

ShortenDomain(h, b1, n, b2, n2) shorten the b2 end of domain whose b2 end is (h, b1, n1) by n2 nucleotides

AddHelix(Helix)

AddHelix(h) add helix h

DeleteHelix(usize)

DeleteHelix(n) delete helix with identifier n

AddStrand(usize, bool, isize)

Add Strand (h, b, n) add a strand on helix b at position n on the right strand if b on the left strand otherwise

DeleteStrand(usize, bool, isize)

DeleteStrand(h, b, n) delete the strand containing only the nucleotide (h, b, n)

CrossOver(usize, bool, usize, isize, bool)

CrossOver(s, b1, h, n, b2) the b1 (5’ if true, 3’ if false) end strand s jumps to helix h at position n on the right strand if b, on the left strand otherwise

MakeBound(usize, bool, isize, usize, bool, isize)

MakeBound(h1, b1, n1, h2, b2, n2) Make a bound between the nucleotides (h1, b1, n1) and (h2, b2, n2)

CutBound(usize, bool, isize, usize, bool, isize)

CutBound(h1, b1, n1, h2, b2, n2) Cut the bound between the nucleotides (h1, b1, n1) and (h2, b2, n2)

Implementations

impl Patch

pub fn apply<S: Serialize, T: Serialize>(&self, design: &mut Design<S, T>)

Apply self on a design

pub fn undo(&self) -> Self

Return the inverse of self

Trait Implementations

impl Clone for Patch

fn clone(&self) -> Patch

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Patch

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.