Struct codenano::Strand

pub struct Strand<Label, DomainLabel> {
    pub domains: Vec<Domain<DomainLabel>>,
    pub sequence: Option<Cow<'static, str>>,
    pub cyclic: bool,
    pub color: Option<u32>,
    pub label: Option<Label>,
}

A DNA strand.

Fields

domains: Vec<Domain<DomainLabel>>

The (ordered) vector of domains, where each domain is a directed interval of a helix.

sequence: Option<Cow<'static, str>>

The sequence of this strand, if any. If the sequence is longer than specified by the domains, a prefix is assumed. Can be skipped in the serialisation.

cyclic: bool

Is this sequence cyclic? Can be skipped (and defaults to false) in the serialization.

color: Option<u32>

Colour of this strand. If skipped, a default colour will be chosen automatically.

label: Option<Label>

An optional label for the strand. Can be serde_json::Value::Null, and skipped in the serialisation.

Methods

impl<StrandLabel, DomainLabel> Strand<StrandLabel, DomainLabel>

pub fn default_color(&self) -> u32

Provide a default color to the strand.

Trait Implementations

impl<Label: Clone, DomainLabel: Clone> Clone for Strand<Label, DomainLabel>

fn clone(&self) -> Strand<Label, DomainLabel>

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl<Label: Default, DomainLabel: Default> Default for Strand<Label, DomainLabel>

fn default() -> Strand<Label, DomainLabel>

Returns the "default value" for a type.

impl<Label: Debug, DomainLabel: Debug> Debug for Strand<Label, DomainLabel>

fn fmt(&self, f: &mut Formatter) -> Result

Formats the value using the given formatter.

impl<Label, DomainLabel> Serialize for Strand<Label, DomainLabel> where
    Label: Serialize,
    DomainLabel: Serialize, 

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error> where
    __S: Serializer, 

Serialize this value into the given Serde serializer.

impl<'de, Label, DomainLabel> Deserialize<'de> for Strand<Label, DomainLabel> where
    Label: Deserialize<'de>,
    DomainLabel: Deserialize<'de>, 

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error> where
    __D: Deserializer<'de>, 

Deserialize this value from the given Serde deserializer.