Struct AlignmentRecord 

pub struct AlignmentRecord<'a> {
    pub flag: i32,
    pub chrom: Cow<'a, str>,
    pub pos: i32,
    pub mapq: i32,
    pub cigar: Cow<'a, str>,
    pub seq: Cow<'a, str>,
    pub xa: Cow<'a, str>,
}

Unified representation of one alignment record used by Scan1 and Scan2.

Cow keeps the type flexible: BAM/SAM parsers can borrow transient slices or promote data to owned strings when groups must outlive the parser buffer.

Fields

flag: i32

chrom: Cow<'a, str>

pos: i32

mapq: i32

cigar: Cow<'a, str>

seq: Cow<'a, str>

xa: Cow<'a, str>

Raw BWA XA:Z payload retained for post-Summary segment selection.

Core CIRI3 parity logic ignores optional tags, but the segments sidecar needs mapper alternatives to avoid choosing a paralogous primary alignment when a confirmed circRNA-compatible placement is available.

Trait Implementations

impl<'a> Clone for AlignmentRecord<'a>

fn clone(&self) -> Self

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl<'a> Debug for AlignmentRecord<'a>

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.