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IndexCompare

ciri_toolkit::index_compare

Struct IndexCompare

pub struct IndexCompare;

Expand description

Splice-signal comparator for BSJ flanking sequences.

A BTreeMap is used deliberately so shift offsets are iterated in ascending order, matching the ordering assumptions in later validator logic.

Implementations§

impl IndexCompare

pub fn index_compare( end_string1: &str, end_string2: &str, ) -> BTreeMap<i32, String>

Compares flanking sequences for nuclear-chromosome splice motifs.

end_string1: Sequence flanking the predicted upstream site (acceptor side).
end_string2: Sequence flanking the predicted downstream site (donor side).

Returns a map of shift offsets to a formatted string containing: offset, strand, donor_signal, acceptor_signal.

pub fn index_compare_chrm( end_string1: &str, end_string2: &str, ) -> BTreeMap<i32, String>

Compares flanking sequences for mitochondrial or otherwise relaxed motif sets.

Mitochondrial handling intentionally accepts a wider motif palette to match the original CIRI3 logic.

Auto Trait Implementations§

impl Freeze for IndexCompare

impl RefUnwindSafe for IndexCompare

impl Send for IndexCompare

impl Sync for IndexCompare

impl Unpin for IndexCompare

impl UnsafeUnpin for IndexCompare

impl UnwindSafe for IndexCompare

Blanket Implementations§

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