Struct census_proteomics::Protein

pub struct Protein<'s> {
    pub accession: &'s str,
    pub description: &'s str,
    pub spectral_count: u16,
    pub sequence_count: u16,
    pub sequence_coverage: f32,
    pub molecular_weight: u32,
    pub peptides: Vec<Peptide<'s>>,
    pub channels: u8,
}

Protein-level TMT quantification data, as well as additional metadata about the protein that is output in the Census file

Fields

accession: &'s str

Uniprot accession identifier

description: &'s str

Long-form description

spectral_count: u16

Number of spectral counts

sequence_count: u16

Number of unique sequence counts

sequence_coverage: f32

Sequence coverage

molecular_weight: u32

Molecular weight

peptides: Vec<Peptide<'s>>

Raw signal intensity channels

channels: u8

Methods

impl<'s> Protein<'s>

pub fn total(&self) -> Vec<u32>

Return the summed intensities for all peptides

pub fn ratios(&self) -> Vec<f64>

Return a vector of normalized ratios, where the signal intensity for each channel is divided by the sum of all channels

Trait Implementations

impl<'s> PartialOrd<Protein<'s>> for Protein<'s>

fn partial_cmp(&self, other: &Protein<'s>) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

fn lt(&self, other: &Protein<'s>) -> bool

This method tests less than (for self and other) and is used by the < operator.

fn le(&self, other: &Protein<'s>) -> bool

This method tests less than or equal to (for self and other) and is used by the <= operator.

fn gt(&self, other: &Protein<'s>) -> bool

This method tests greater than (for self and other) and is used by the > operator.

fn ge(&self, other: &Protein<'s>) -> bool

This method tests greater than or equal to (for self and other) and is used by the >= operator.

impl<'s> PartialEq<Protein<'s>> for Protein<'s>

fn eq(&self, other: &Protein<'s>) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Protein<'s>) -> bool

This method tests for !=.