Struct block_aligner::scan_block::Trace

pub struct Trace { /* private fields */ }

Holds the trace generated by block aligner.

Implementations

impl Trace

pub fn cigar(&self, i: usize, j: usize, cigar: &mut Cigar)

Create a CIGAR string that represents a single traceback path ending on the specified location.

When aligning q against r, this represents the edits to go from r to q. Matches and mismatches are both represented with M.

pub fn cigar_eq( &self, query: &PaddedBytes, reference: &PaddedBytes, i: usize, j: usize, cigar: &mut Cigar )

Create a CIGAR string that represents a single traceback path ending on the specified location.

When aligning q against r, this represents the edits to go from r to q. Matches are represented using = and mismatches are represented using X.

pub fn blocks(&self) -> Vec<Rectangle>

Return all of the rectangular regions that were calculated separately as block aligner shifts and grows.

Trait Implementations

impl Clone for Trace

fn clone(&self) -> Trace

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.