Enum block_aligner::cigar::Operation

#[repr(u8)]
pub enum Operation {
    Sentinel,
    M,
    Eq,
    X,
    I,
    D,
}

A match/mismatch, insertion, or deletion operation.

When aligning q against r, this represents the edit operations to get from r to q.

Variants

Sentinel

Placeholder variant.

M

Match or mismatch.

This is a diagonal transition in the DP matrix with |q| + 1 rows and |r| + 1 columns.

Eq

Match.

X

Mismatch.

I

Insertion.

When aligning sequences q against r, this is a gap in r. This is a row transition in the DP matrix with |q| + 1 rows and |r| + 1 columns.

D

Deletion.

When aligning sequences q against r, this is a gap in q. This is a column transition in the DP matrix with |q| + 1 rows and |r| + 1 columns.

Trait Implementations

impl Clone for Operation

fn clone(&self) -> Operation

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Operation

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq<Operation> for Operation

fn eq(&self, other: &Operation) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Copy for Operation

impl StructuralPartialEq for Operation