Enum SubCommand 

pub enum SubCommand {
    Depth(DepthOptions),
    Filter(FilterOptions),
    Index(IndexOptions),
    Plot(PlotOptions),
    Snail(SnailOptions),
    Taxonomy(TaxonomyOptions),
    Validate(ValidateOptions),
    Create(CreateOptions),
}

blobtk subcommands

Variants

Depth(DepthOptions)

Calculate sequencing coverage depth. Called as blobtk depth

Filter(FilterOptions)

Filter files based on list of sequence names. Called as blobtk filter

Index(IndexOptions)

[experimental] Index files for GenomeHubs. Called as blobtk index

Plot(PlotOptions)

Process a BlobDir and produce static plots. Called as blobtk plot

Snail(SnailOptions)

Produce a snail plot from a BlobDir or FASTA file. Called as blobtk snail

Taxonomy(TaxonomyOptions)

[experimental] Process a taxonomy and lookup lineages, or start the API server with –api Called as blobtk taxonomy [--api] ...

Validate(ValidateOptions)

[experimental] Validate BlobToolKit and GenomeHubs files. Called as blobtk validate

Create(CreateOptions)

Create a minimal BlobDir from input files (FASTA and optional BUSCO) Called as blobtk create

Trait Implementations

impl Debug for SubCommand

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromArgMatches for SubCommand

fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn from_arg_matches_mut( __clap_arg_matches: &mut ArgMatches, ) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn update_from_arg_matches( &mut self, __clap_arg_matches: &ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

fn update_from_arg_matches_mut<'b>( &mut self, __clap_arg_matches: &mut ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

impl Subcommand for SubCommand

fn augment_subcommands<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate Self via FromArgMatches::from_arg_matches_mut

fn augment_subcommands_for_update<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate self via FromArgMatches::update_from_arg_matches_mut

fn has_subcommand(__clap_name: &str) -> bool

Test whether Self can parse a specific subcommand