Struct ProteinSequence

pub struct ProteinSequence { /* private fields */ }

BLAST database representation of a protein sequence.

Implementations

impl ProteinSequence

pub fn iter(&self) -> impl Iterator<Item = NcbiStdaaBase> + '_

Returns an iterator over the IUPAC amino acid representation fo the sequence.

pub fn len(&self) -> usize

Returns the number of bases in the sequence

pub fn is_empty(&self) -> bool

pub fn sequence_bytes(&self) -> &[u8]

Returns the raw sequence as bytes.

Trait Implementations

impl Clone for ProteinSequence

fn clone(&self) -> ProteinSequence

Returns a duplicate of the value.

const fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ProteinSequence

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for ProteinSequence

Render the sequence as an IUPAC amino acid sequence.

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromIterator<NcbiStdaaBase> for ProteinSequence

fn from_iter<T: IntoIterator<Item = NcbiStdaaBase>>(iter: T) -> Self

Creates a value from an iterator.

impl FromStr for ProteinSequence

Create a ProteinSequence from an IUPAC amino acid sequence. Accepts both upper and lowercase versions of the bases.

type Err = ProteinConversionError

The associated error which can be returned from parsing.

fn from_str(s: &str) -> Result<Self, Self::Err>

Parses a string s to return a value of this type.

impl Ord for ProteinSequence

fn cmp(&self, other: &ProteinSequence) -> Ordering

This method returns an Ordering between self and other.

fn max(self, other: Self) -> Self

where Self: Sized,

Compares and returns the maximum of two values.

fn min(self, other: Self) -> Self

where Self: Sized,

Compares and returns the minimum of two values.

fn clamp(self, min: Self, max: Self) -> Self

where Self: Sized,

Restrict a value to a certain interval.

impl PartialEq for ProteinSequence

fn eq(&self, other: &ProteinSequence) -> bool

Tests for self and other values to be equal, and is used by ==.

const fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PartialOrd for ProteinSequence

fn partial_cmp(&self, other: &ProteinSequence) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

fn lt(&self, other: &Rhs) -> bool

Tests less than (for self and other) and is used by the < operator.

fn le(&self, other: &Rhs) -> bool

Tests less than or equal to (for self and other) and is used by the <= operator.

fn gt(&self, other: &Rhs) -> bool

Tests greater than (for self and other) and is used by the > operator.

fn ge(&self, other: &Rhs) -> bool

Tests greater than or equal to (for self and other) and is used by the >= operator.

impl Eq for ProteinSequence

impl StructuralPartialEq for ProteinSequence