blastdb_sequence_util

Struct Ncbi8naBase

pub struct Ncbi8naBase(/* private fields */);

Expand description

Single byte base representation where each of 4 bits represents an unambiguous base.

count_zeros() of each unambiguous base (ACGT) is 1; ambiguous bases are represented by setting bits corresponding to each of the unambiguous bases that it may be (N = 0xf). Note that in this representation 0 is invalid.

Trait Implementations§

impl Clone for Ncbi8naBase

fn clone(&self) -> Ncbi8naBase

Returns a duplicate of the value. Read more

1.0.0 · Source§

const fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

impl Debug for Ncbi8naBase

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

impl Display for Ncbi8naBase

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

impl From<Blast8naBase> for Ncbi8naBase

fn from(value: Blast8naBase) -> Self

Converts to this type from the input type.

impl From<Ncbi2naBase> for Ncbi8naBase

fn from(value: Ncbi2naBase) -> Self

Converts to this type from the input type.

impl From<Ncbi8naBase> for Blast8naBase

fn from(value: Ncbi8naBase) -> Self

Converts to this type from the input type.

impl From<Ncbi8naBase> for char

fn from(value: Ncbi8naBase) -> Self

Converts to this type from the input type.

impl From<Ncbi8naBase> for u8

Convert Ncbi8na bases to IUPACNA format.

fn from(value: Ncbi8naBase) -> Self

Converts to this type from the input type.

impl FromIterator<Ncbi8naBase> for NucleotideSequence

fn from_iter<T>(into_iter: T) -> Self
where T: IntoIterator<Item = Ncbi8naBase>,

Creates a value from an iterator. Read more

impl PartialEq for Ncbi8naBase

fn eq(&self, other: &Ncbi8naBase) -> bool

Tests for self and other values to be equal, and is used by ==.

1.0.0 · Source§

const fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl TryFrom<Ncbi8naBase> for Ncbi2naBase

type Error = NucleotideConversionError

The type returned in the event of a conversion error.

fn try_from(value: Ncbi8naBase) -> Result<Self, Self::Error>

Performs the conversion.

impl TryFrom<u8> for Ncbi8naBase

Convert IUPACNA bases to Ncbi8na format.

type Error = NucleotideConversionError

The type returned in the event of a conversion error.

fn try_from(value: u8) -> Result<Ncbi8naBase, Self::Error>

Performs the conversion.

impl Copy for Ncbi8naBase

impl Eq for Ncbi8naBase

impl StructuralPartialEq for Ncbi8naBase

Auto Trait Implementations§

impl Freeze for Ncbi8naBase

impl RefUnwindSafe for Ncbi8naBase

impl Send for Ncbi8naBase

impl Sync for Ncbi8naBase

impl Unpin for Ncbi8naBase

impl UnwindSafe for Ncbi8naBase

Blanket Implementations§

impl<T> Any for T
where T: 'static + ?Sized,

fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

impl<T> Borrow<T> for T
where T: ?Sized,

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

impl<T> BorrowMut<T> for T
where T: ?Sized,

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

impl<T> CloneToUninit for T
where T: Clone,

unsafe fn clone_to_uninit(&self, dest: *mut u8)

🔬This is a nightly-only experimental API. (clone_to_uninit)

Performs copy-assignment from self to dest. Read more

impl<T> From<T> for T

fn from(t: T) -> T

Returns the argument unchanged.

impl<T, U> Into<U> for T
where U: From<T>,

fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

impl<T> ToOwned for T
where T: Clone,

type Owned = T

The resulting type after obtaining ownership.

fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more

fn clone_into(&self, target: &mut T)

Uses borrowed data to replace owned data, usually by cloning. Read more

impl<T> ToString for T
where T: Display + ?Sized,

fn to_string(&self) -> String

Converts the given value to a String. Read more

impl<T, U> TryFrom<U> for T
where U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.

impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.

impl<V, T> VZip<V> for T
where V: MultiLane<T>,

fn vzip(self) -> V