Enum bio_types::alignment::AlignmentMode

pub enum AlignmentMode {
    Local,
    Semiglobal,
    Global,
    Custom,
}

The modes of alignment supported by the aligner include standard modes such as Global, Semi-Global and Local alignment. In addition to this, user can also invoke the custom mode. In the custom mode, users can explicitly specify the clipping penalties for prefix and suffix of strings 'x' and 'y' independently. Under the hood the standard modes are implemented as special cases of the custom mode with the clipping penalties appropriately set.

The default alignment mode is Global.

Variants

Local

Semiglobal

Global

Custom

Trait Implementations

impl Clone for AlignmentMode

fn clone(&self) -> AlignmentMode

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Copy for AlignmentMode

impl Debug for AlignmentMode

fn fmt(&self, f: &mut Formatter) -> Result

Formats the value using the given formatter.

impl Default for AlignmentMode

fn default() -> Self

Returns the "default value" for a type.

impl<'de> Deserialize<'de> for AlignmentMode

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error> where
    __D: Deserializer<'de>, 

Deserialize this value from the given Serde deserializer.

impl Eq for AlignmentMode

impl PartialEq<AlignmentMode> for AlignmentMode

fn eq(&self, other: &AlignmentMode) -> bool

This method tests for self and other values to be equal, and is used by ==.

#[must_use]fn ne(&self, other: &Rhs) -> bool

This method tests for !=.

impl Serialize for AlignmentMode

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error> where
    __S: Serializer, 

Serialize this value into the given Serde serializer.

impl StructuralEq for AlignmentMode

impl StructuralPartialEq for AlignmentMode