PartialTranslationTable

bio_seq::translation

Trait PartialTranslationTable 

Source 
pub trait PartialTranslationTable<A: Codec, B: Codec> {
    // Required methods
    fn try_to_amino(
        &self,
        codon: &SeqSlice<A>,
    ) -> Result<B, TranslationError<A, B>>;
    fn try_to_codon(&self, amino: B) -> Result<Seq<A>, TranslationError<A, B>>;
}
Expand description

A partial translation table where not all triples of characters map to amino acids

Required Methods§

Source

fn try_to_amino(&self, codon: &SeqSlice<A>) -> Result<B, TranslationError<A, B>>

§Errors

Will return an Err if a codon does not map to an amino acid. This would be the case for a translation table from codons with ambiguous nucleotide codes such as ANC, SWS, NNN, etc.

Source

fn try_to_codon(&self, amino: B) -> Result<Seq<A>, TranslationError<A, B>>

§Errors

Will return an Err if the amino acid can be translated from different codons

Implementors§