Struct BigBedWrite

pub struct BigBedWrite<W: Write + Seek + Send + 'static> {
    pub options: BBIWriteOptions,
    pub autosql: Option<String>,
    /* private fields */
}

The struct used to write a bigBed file

Fields

options: BBIWriteOptions

autosql: Option<String>

Implementations

impl BigBedWrite<File>

pub fn create_file( path: impl AsRef<Path>, chrom_sizes: HashMap<String, u32>, ) -> Result<Self>

impl<W: Write + Seek + Send + 'static> BigBedWrite<W>

pub fn new(out: W, chrom_sizes: HashMap<String, u32>) -> Self

pub fn write<V: BBIDataSource<Value = BedEntry>>( self, vals: V, runtime: Runtime, ) -> Result<(), BBIProcessError<V::Error>>

Write the values from V as a bigWig. Will utilize the provided runtime for encoding values and for reading through the values (potentially parallelized by chromosome).

pub fn write_multipass<V: BBIDataSource<Value = BedEntry>>( self, make_vals: impl Fn() -> Result<V, BBIProcessError<V::Error>>, runtime: Runtime, ) -> Result<(), BBIProcessError<V::Error>>

Write the values from V as a bigBed. Will utilize the provided runtime for encoding values and for reading through the values (potentially parallelized by chromosome). This will take two passes on the provided values: first to write the values themselves, then the zooms. This is beneficial over write on smaller files, where the encoding of high resolution zooms takes up a substantial portion of total processing time.