Struct BroadPeak 

pub struct BroadPeak {
    pub chrom: String,
    pub start: u64,
    pub end: u64,
    pub name: Option<String>,
    pub score: Option<Score>,
    pub strand: Option<Strand>,
    pub signal_value: f64,
    pub p_value: Option<f64>,
    pub q_value: Option<f64>,
}

A BroadPeak record is a BED6+4 format that is used to store called peaks.

Fields

chrom: String

start: u64

end: u64

name: Option<String>

score: Option<Score>

strand: Option<Strand>

signal_value: f64

p_value: Option<f64>

q_value: Option<f64>

Trait Implementations

impl BEDLike for BroadPeak

fn chrom(&self) -> &str

Return the chromosome name of the record

fn set_chrom(&mut self, chrom: &str) -> &mut Self

Change the chromosome name of the record

fn start(&self) -> u64

Return the 0-based start position of the record

fn set_start(&mut self, start: u64) -> &mut Self

Change the 0-based start position of the record

fn end(&self) -> u64

Return the end position (non-inclusive) of the record

fn set_end(&mut self, end: u64) -> &mut Self

Change the end position (non-inclusive) of the record

fn name(&self) -> Option<&str>

Return the name of the record

fn score(&self) -> Option<Score>

Return the score of the record

fn strand(&self) -> Option<Strand>

Return the strand of the record

fn len(&self) -> u64

Return the length of the record. Return 0 if the end position is smaller than the start position.

fn compare(&self, other: &Self) -> Ordering

fn overlap<B: BEDLike>(&self, other: &B) -> Option<GenomicRange>

Return the overlap

fn n_overlap<B: BEDLike>(&self, other: &B) -> u64

Return the size of overlap between two records

fn to_genomic_range(&self) -> GenomicRange

Convert the record to a GenomicRange

fn split_by_len(&self, bin_size: u64) -> impl Iterator<Item = GenomicRange>

Split into consecutive records with the specified length. The length of the last record may be shorter.

fn rsplit_by_len(&self, bin_size: u64) -> impl Iterator<Item = GenomicRange>

Split into consecutive records with the specified length starting from the end. The result is in reverse order compared to split_by_len. The length of the last record may be shorter.

impl<'__de, __Context> BorrowDecode<'__de, __Context> for BroadPeak

fn borrow_decode<__D: BorrowDecoder<'__de, Context = __Context>>( decoder: &mut __D, ) -> Result<Self, DecodeError>

Attempt to decode this type with the given BorrowDecode.

impl Clone for BroadPeak

fn clone(&self) -> BroadPeak

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for BroadPeak

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<__Context> Decode<__Context> for BroadPeak

fn decode<__D: Decoder<Context = __Context>>( decoder: &mut __D, ) -> Result<Self, DecodeError>

Attempt to decode this type with the given Decode.

impl Display for BroadPeak

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Encode for BroadPeak

fn encode<__E: Encoder>(&self, encoder: &mut __E) -> Result<(), EncodeError>

Encode a given type.

impl FromStr for BroadPeak

type Err = ParseError

The associated error which can be returned from parsing.

fn from_str(s: &str) -> Result<Self, Self::Err>

Parses a string s to return a value of this type.

impl PartialEq for BroadPeak

fn eq(&self, other: &BroadPeak) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl StructuralPartialEq for BroadPeak