Struct bed_utils::bed::BedGraph

pub struct BedGraph<V> {
    pub chrom: String,
    pub start: u64,
    pub end: u64,
    pub value: V,
}

The bedGraph format allows display of continuous-valued data in track format. This display type is useful for probability scores and transcriptome data.

Fields

chrom: String

start: u64

end: u64

value: V

Implementations

impl<V> BedGraph<V>

pub fn new<C>(chrom: C, start: u64, end: u64, value: V) -> Self

where C: Into<String>,

pub fn from_bed<B: BEDLike>(bed: &B, value: V) -> Self

Trait Implementations

impl<V> BEDLike for BedGraph<V>

fn chrom(&self) -> &str

Return the chromosome name of the record

fn set_chrom(&mut self, chrom: &str) -> &mut Self

Change the chromosome name of the record

fn start(&self) -> u64

Return the 0-based start position of the record

fn set_start(&mut self, start: u64) -> &mut Self

Change the 0-based start position of the record

fn end(&self) -> u64

Return the end position (non-inclusive) of the record

fn set_end(&mut self, end: u64) -> &mut Self

Change the end position (non-inclusive) of the record

fn name(&self) -> Option<&str>

Return the name of the record

fn score(&self) -> Option<Score>

Return the score of the record

fn strand(&self) -> Option<Strand>

Return the strand of the record

fn len(&self) -> u64

Return the length of the record. Return 0 if the end position is smaller than the start position.

fn compare(&self, other: &Self) -> Ordering

fn overlap<B: BEDLike>(&self, other: &B) -> Option<GenomicRange>

Return the overlap

fn n_overlap<B: BEDLike>(&self, other: &B) -> u64

Return the size of overlap between two records

fn to_genomic_range(&self) -> GenomicRange

Convert the record to a GenomicRange

impl<V: Clone> Clone for BedGraph<V>

fn clone(&self) -> BedGraph<V>

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl<V: Debug> Debug for BedGraph<V>

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de, V> Deserialize<'de> for BedGraph<V>

where V: Deserialize<'de>,

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl<V> Display for BedGraph<V>

where V: Display,

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<V> FromStr for BedGraph<V>

where V: FromStr, <V as FromStr>::Err: Debug,

type Err = ParseError

The associated error which can be returned from parsing.

fn from_str(s: &str) -> Result<Self, Self::Err>

Parses a string s to return a value of this type.

impl<V: PartialEq> PartialEq for BedGraph<V>

fn eq(&self, other: &BedGraph<V>) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl<V> Serialize for BedGraph<V>

where V: Serialize,

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl<V> StructuralPartialEq for BedGraph<V>