Struct Csi 

pub struct Csi { /* private fields */ }

A struct representing CSI index file content

Implementations

impl Csi

pub fn from_path(p: impl AsRef<Path>) -> Result<Self>

Create Csi from a path to a *.csi file

pub fn get_bin_id(&self, beg: i64, end: i64) -> u32

Convert positional coordinate range to a bin number

beg, end`` coordinates are 0-based. It is exclusive for end. For some reason, not all length bin are searchable. It is seems that setting endtobeg` + 1 works well.

pub fn get_bin_details(&self, seqid: usize, bin_id: u32) -> Result<&CsiBin>

Get CsiBin based the chromosome id and bin number.

The return CsiBin can provide details of the included chunks.

pub fn get_bin_limit(&self) -> u32

Get the max possible bin number in theory. Note, the maximum bin may not be present in the Csi index file.

Trait Implementations

impl Debug for Csi

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for Csi

fn default() -> Csi

Returns the “default value” for a type.