Struct barcode_count::parse::SequenceMatchResult

pub struct SequenceMatchResult {
    pub sample_barcode: String,
    pub counted_barcodes: Vec<String>,
    pub counted_barcode_error: bool,
    pub sample_barcode_error: bool,
    pub random_barcode: String,
}

A struct to hold the results of the regex search on the sequence along with perform the functions to fix and find

Fields

sample_barcode: String

counted_barcodes: Vec<String>

counted_barcode_error: bool

sample_barcode_error: bool

random_barcode: String

Implementations

impl SequenceMatchResult

pub fn new(
    barcodes: Captures<'_>,
    barcode_groups: &[String],
    counted_barcode_seqs: &[HashSet<String>],
    counted_barcode_max_errors: &[u8],
    sample_seqs: &HashSet<String>,
    sample_seqs_max_errors: u8
) -> Result<SequenceMatchResult, Box<dyn Error>>

pub fn barcode_string(&self) -> String

Returns a comma separated counted barcodes string. Perfect for CSV file writing