Struct barcode_count::info::SequenceFormat

pub struct SequenceFormat {
    pub format_string: String,
    pub regions_string: String,
    pub length: usize,
    pub format_regex: Regex,
    pub regex_string: String,
    pub barcode_num: usize,
    pub random_barcode: bool,
    // some fields omitted
}

Fields

format_string: String

regions_string: String

length: usize

format_regex: Regex

regex_string: String

barcode_num: usize

random_barcode: bool

Implementations

impl SequenceFormat

pub fn new(format: String) -> Result<Self, Box<dyn Error>>

Creates a new SequenceFormat struct which holds the sequencing format information, such as, where the barcodes are located within the sequence

pub fn barcode_lengths(&self) -> Result<Vec<u8>, Box<dyn Error>>

Returns a Vec of the size of all counted barcodes within the seqeunce format

pub fn sample_length_option(&self) -> Result<Option<u8>, Box<dyn Error>>

Returns the sample barcode length found in the format file string

pub fn constant_region_length(&self) -> u8

Returns the amount of nucleotides within the constant regions from the format file

pub fn add_start(&self, start: usize)

pub fn start_found(&self) -> bool

pub fn start(&self) -> usize

pub fn clone_arcs(&self) -> Self

Trait Implementations

impl Debug for SequenceFormat

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for SequenceFormat

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.