Struct barcode_count::info::MaxSeqErrors[−][src]

pub struct MaxSeqErrors { /* fields omitted */ }

Implementations

[src]

impl MaxSeqErrors

[src]

pub fn new(
 sample_errors_option: Option<u8>,
 sample_barcode_size_option: Option<u8>,
 barcode_errors_option: Option<u8>,
 barcode_sizes: Vec<u8>,
 constant_errors_option: Option<u8>,
 constant_region_size: u8,
 min_quality: f32
) -> Result<Self, Box<dyn Error>>

Create a new sequence error struct

Example

use barcode_count::info::MaxSeqErrors;

let sample_errors_option = None;
let sample_barcode_size_option = Some(10);
let barcode_errors_option = None;
let barcode_sizes = vec![8,8,8];
let constant_errors_option = None;
let constant_region_size = 30;
let min_quality = 0.0;
let mut max_sequence_errors = MaxSeqErrors::new(sample_errors_option, sample_barcode_size_option, barcode_errors_option, barcode_sizes, constant_errors_option, constant_region_size, min_quality).unwrap();

[src]

pub fn max_constant_errors(&self) -> u8

Returns the maximum allowed constant region errors

Example

use barcode_count::info::MaxSeqErrors;

let sample_errors_option = None;
let sample_barcode_size_option = Some(10);
let barcode_errors_option = None;
let barcode_sizes = vec![8,8,8];
let constant_errors_option = None;
let constant_region_size = 30;
let min_quality = 0.0;
let mut max_sequence_errors = MaxSeqErrors::new(sample_errors_option, sample_barcode_size_option, barcode_errors_option, barcode_sizes, constant_errors_option, constant_region_size, min_quality).unwrap();
assert_eq!(max_sequence_errors.max_constant_errors(), 6);
let barcode_sizes = vec![8,8,8];
let constant_errors_option = Some(3);
let mut max_sequence_errors = MaxSeqErrors::new(sample_errors_option, sample_barcode_size_option, barcode_errors_option, barcode_sizes, constant_errors_option, constant_region_size, min_quality).unwrap();
assert_eq!(max_sequence_errors.max_constant_errors(), 3);

[src]

pub fn max_sample_errors(&self) -> u8

Returns the maximum allowed sample barcode errors

Example

use barcode_count::info::MaxSeqErrors;

let sample_errors_option = None;
let sample_barcode_size_option = Some(10);
let barcode_errors_option = None;
let barcode_sizes = vec![8,8,8];
let constant_errors_option = None;
let constant_region_size = 30;
let min_quality = 0.0;
let mut max_sequence_errors = MaxSeqErrors::new(sample_errors_option, sample_barcode_size_option, barcode_errors_option, barcode_sizes, constant_errors_option, constant_region_size, min_quality).unwrap();
assert_eq!(max_sequence_errors.max_sample_errors(), 2);
let barcode_sizes = vec![8,8,8];
let sample_errors_option = Some(3);
let mut max_sequence_errors = MaxSeqErrors::new(sample_errors_option, sample_barcode_size_option, barcode_errors_option, barcode_sizes, constant_errors_option, constant_region_size, min_quality).unwrap();
assert_eq!(max_sequence_errors.max_sample_errors(), 3);

[src]

pub fn max_barcode_errors(&self) -> &[u8 ]ⓘ
Notable traits for &'_ [u8 ]
`impl<'_> Read for &'_ [u8]impl<'_> Write for &'_ mut [u8]`

Returns the maximum allowed errors within each counted barcode

Example

use barcode_count::info::MaxSeqErrors;

let sample_errors_option = None;
let sample_barcode_size_option = Some(10);
let barcode_errors_option = None;
let barcode_sizes = vec![8,8,8];
let constant_errors_option = None;
let constant_region_size = 30;
let min_quality = 0.0;
let mut max_sequence_errors = MaxSeqErrors::new(sample_errors_option, sample_barcode_size_option, barcode_errors_option, barcode_sizes, constant_errors_option, constant_region_size, min_quality).unwrap();
assert_eq!(max_sequence_errors.max_barcode_errors(), vec![1,1,1]);
let barcode_sizes = vec![8,8,8];
let barcode_errors_option = Some(2);
let mut max_sequence_errors = MaxSeqErrors::new(sample_errors_option, sample_barcode_size_option, barcode_errors_option, barcode_sizes, constant_errors_option, constant_region_size, min_quality).unwrap();
assert_eq!(max_sequence_errors.max_barcode_errors(), vec![2,2,2]);