Struct Args 

pub struct Args {

    pub fastq: String,
    pub format: String,
    pub sample_barcodes_option: Option<String>,
    pub counted_barcodes_option: Option<String>,
    pub output_dir: String,
    pub threads: u16,
    pub prefix: String,
    pub merge_output: bool,
    pub barcodes_errors_option: Option<u16>,
    pub sample_errors_option: Option<u16>,
    pub constant_errors_option: Option<u16>,
    pub min_average_quality_score: f32,
    pub enrich: bool,
}

A struct that contains and initiates all input arguments

Fields

fastq: String

format: String

sample_barcodes_option: Option<String>

counted_barcodes_option: Option<String>

output_dir: String

threads: u16

prefix: String

merge_output: bool

barcodes_errors_option: Option<u16>

sample_errors_option: Option<u16>

constant_errors_option: Option<u16>

min_average_quality_score: f32

enrich: bool

Implementations

impl Args

pub fn new() -> Result<Self>