Struct barcode_count::info::SequenceFormat

pub struct SequenceFormat {
    pub format_string: String,
    pub regions_string: String,
    pub length: usize,
    pub constant_region_length: u16,
    pub format_regex: Regex,
    pub barcode_num: usize,
    pub barcode_lengths: Vec<u16>,
    pub sample_length_option: Option<u16>,
    pub random_barcode: bool,
    pub sample_barcode: bool,
}

Fields

format_string: String

regions_string: String

length: usize

constant_region_length: u16

format_regex: Regex

barcode_num: usize

barcode_lengths: Vec<u16>

sample_length_option: Option<u16>

random_barcode: bool

sample_barcode: bool

Implementations

impl SequenceFormat

pub fn new() -> Result<Self>

Creates a new empty SequenceFormat struct

Example

use barcode_count::info::SequenceFormat;

let sequence_format = SequenceFormat::new();

pub fn parse_format_file(format_path: &str) -> Result<Self>

Parses the format file into all fields of the SequenceFormat struct, including the regex search, barcode sizes, and sequence format strings.

Trait Implementations

impl Clone for SequenceFormat

fn clone(&self) -> SequenceFormat

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for SequenceFormat

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for SequenceFormat

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.