Struct bam::record::cigar::Cigar

pub struct Cigar(_);

A wrapper around raw Cigar.

Methods

impl Cigar

pub fn clear(&mut self)

Clears the contents but does not touch capacity.

pub fn fill_from_raw<I: IntoIterator<Item = u32>>(&mut self, iter: I)

Fills Cigar from raw data.

pub fn fill_from_text<I: IntoIterator<Item = u8>>(
    &mut self,
    text: I
) -> Result<(), String>

Fills Cigar from text. If the error occured, the cigar may be filled partly.

pub fn at(&self, index: usize) -> (u32, Operation)

Returns a pair (length, operation) by its index.

pub fn iter(&self) -> impl Iterator<Item = (u32, Operation)> + '_

Returns an iterator over typles (length, operation).

pub fn len(&self) -> usize

Cigar length.

pub fn raw(&self) -> &[u32]

Returns raw Cigar. Each u32 value represents length << 4 | operation, where operations are encoded from 0 to 8.

pub fn calculate_ref_len(&self) -> u32

Calculates reference alignment length. Consider using Record::calculate_end, as the record alignment end is stored once calculated.

pub fn calculate_query_len(&self) -> u32

Calculates query length.

pub fn shrink_to_fit(&mut self)

Shrink inner vector

pub fn write_readable<W: Write>(&self, f: &mut W) -> Result<()>

Writes to f in a human readable format. Write * if empty.

Trait Implementations

impl Display for Cigar

fn fmt(&self, f: &mut Formatter) -> Result<(), Error>

Formats the value using the given formatter.