[−][src]Module bam::record

SAM/BAM record, sequence, qualities and operations on them.

Modules

cigar	Cigar and operations on it.
tags	Record tags and operations on them.

Flag	A wrapper around BAM/SAM flag.
Qualities	Wrapper around qualities.
Record	BAM Record.
Sequence	Wrapper around raw sequence, stored as an `[u8; (len + 1) / 2]`. Each four bits encode a nucleotide in the following order: `=ACMGRSVTWYHKDBN`.

Error produced while reading Record.

ALL_SEGMENTS_ALIGNED	`= 0x2`. Record and its mate mapped properly.
FIRST_IN_PAIR	`= 0x40`. Record is the first segment in a template.
LAST_IN_PAIR	`= 0x80`. Record is the last segment in a template.
MATE_REVERSE_STRAND	`= 0x20`. Record mate is on the reverse strand.
MATE_UNMAPPED	`= 0x8`. Record mate is unmapped.
PCR_OR_OPTICAL_DUPLICATE	`= 0x400`. Record is PCR or optical duplicate.
RECORD_FAILS_QC	`= 0x200`. Record fails platform/vendor quality checks.
RECORD_PAIRED	`= 0x1`. Record has a mate.
RECORD_REVERSE_STRAND	`= 0x10`. Record is on the reverse strand.
RECORD_UNMAPPED	`= 0x4`. Record is unmapped.
SECONDARY	`= 0x100`. Alignment is secondary (not primary).
SUPPLEMENTARY	`= 0x800`. Alignment is supplementary (chimeric/split).