Struct GenusResult 

pub struct GenusResult {

    pub arg_name: String,
    pub contig_name: String,
    pub genus: Option<String>,
    pub confidence: f64,
    pub specificity: f64,
    pub upstream_len: usize,
    pub downstream_len: usize,
    pub top_matches: Vec<(String, f64)>,
    pub snp_status: SnpStatus,
    pub upstream_seq: String,
    pub downstream_seq: String,
    pub context: String,
    pub n_genera_tied: usize,
    pub species: Option<String>,
    pub species_top_matches: Vec<(String, f64)>,
    pub n_species_tied: usize,
    pub credible_set: Vec<(String, f64)>,
    pub support: f64,
    pub resolution_distance: f64,
    pub limited_by: String,
    pub resolution_rank: String,
    pub resolution_taxon: String,
    pub credible_set_grouped: String,
}

Fields

arg_name: String

ARG gene name.

contig_name: String

Contig identifier.

genus: Option<String>

Classified genus (None if unresolved).

confidence: f64

Classification confidence (alignment identity, 0-100).

specificity: f64

Gene-genus specificity in database (0-100).

upstream_len: usize

Extracted upstream flanking length.

downstream_len: usize

Extracted downstream flanking length.

top_matches: Vec<(String, f64)>

Top genus matches with scores: [(genus, score), …].

snp_status: SnpStatus

SNP verification status (for point mutation ARGs).

upstream_seq: String

Extracted upstream flanking sequence (retained for export/inspection of unresolved loci — e.g. flanking present but no flanking-DB match).

downstream_seq: String

Extracted downstream flanking sequence (retained for export/inspection).

context: String

Replicon context of the matched reference flanking: “plasmid” (mobile, genus unreliable), “chromosome”, “ambiguous”, or “NA” (no plasmid list loaded).

n_genera_tied: usize

Number of genera within GENUS_TIE_PCT of the top score (from the full score list, not just top-5). ≥2 means the call cannot be pinned to a single genus.

species: Option<String>

Best species (binomial) when a species map is loaded and matches clear the (higher) species identity threshold; None if unavailable/undeterminable.

species_top_matches: Vec<(String, f64)>

Top species matches with scores, for multi-species reporting.

n_species_tied: usize

Number of species within GENUS_TIE_PCT of the top species score.

credible_set: Vec<(String, f64)>

Credible set: genera accumulating posterior mass to the conformal threshold, each with its posterior — the structured form of the answer (a set of taxa, not a single call). The TSV emits its grouped display (credible_set_grouped); this Vec is kept for programmatic consumers.

support: f64

Posterior mass covered by credible_set (≈0.9+). UNCALIBRATED until conformal calibration is fitted on a ground-truth set; treat as a raw confidence for now.

resolution_distance: f64

Mash radius of the credible set: max distance from its medoid to any member. 0 for a single-genus call; larger = the shared context spans a broader clade.

limited_by: String

Why resolution stopped: “query” (flank truncated by the contig edge), “biology” (full flank but context genuinely shared across genera), or “none” (single genus).

resolution_rank: String

Ragged rank of the answer: the LCA rank of the credible set (species/genus/family/ …/root). This is the taxonomic level at which the ARG’s context is actually shared.

resolution_taxon: String

LCA taxon name at resolution_rank (e.g. “Enterobacteriaceae”).

credible_set_grouped: String

The credible set rendered with its close-genera sub-clusters grouped (see [group_credible_set]): g1(p1),g2(p2) | g3(p3). This is the display form of credible_set; empty when there is none.

Trait Implementations

impl Clone for GenusResult

fn clone(&self) -> GenusResult

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for GenusResult

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for GenusResult

fn default() -> Self

Returns the “default value” for a type.