zoi_cli/cmd/install/

orchestrator.rs

//! High-level installation orchestration.

use std::collections::{HashMap, HashSet};
use std::sync::Mutex;
use std::sync::atomic::{AtomicUsize, Ordering};

use anyhow::{Result, anyhow};
use colored::Colorize;
use indicatif::MultiProgress;
use mlua::LuaSerdeExt;
use rayon::prelude::*;
use serde_json::json;
use zoi_core::types;
use zoi_install::{installer, lockfile, plan, preflight, resolver, util};
use zoi_plugins::PluginManager;
use zoi_project as project;
use zoi_resolver::local;
use zoi_transaction as transaction;

use crate::cmd::ux;
use crate::utils as cli_utils;

/// Options for the installation orchestrator.
pub struct InstallOptions<'a> {
    /// The scope to install the packages into.
    pub scope: types::Scope,
    /// Whether to force the installation.
    pub force: bool,
    /// Whether to install all optional dependencies.
    pub all_optional: bool,
    /// Whether to skip confirmation prompts.
    pub yes: bool,
    /// Whether to save the installation to the project file.
    pub save: bool,
    /// Whether to install only the dependency nodes, skipping direct
    /// packages.
    pub deps_only: bool,
    /// The build type to use.
    pub build_type: Option<&'a str>,
    /// Whether to perform a dry run.
    pub dry_run: bool,
    /// The plugin manager to use.
    pub plugin_manager: Option<&'a PluginManager>,
    /// Whether to force building from source.
    pub build: bool,
    /// Whether to use the lockfile exactly (frozen).
    pub frozen: bool,
    /// Whether to explain decisions.
    pub explain: bool,
    /// Whether to emit machine-readable plan JSON.
    pub plan_json: bool,
    /// Number of download retry attempts.
    pub retry: u32,
    /// Whether to show verbose output.
    pub verbose: bool,
    /// Whether to use PURL (Package URL) specification.
    pub purl: bool,
    /// Optional project configuration override.
    pub project_config: Option<project::config::ProjectConfig>
}

/// The installation orchestrator.
pub struct Orchestrator<'a> {
    /// The options used for the installation.
    options: InstallOptions<'a>
}

/// Keeps only the external dependencies still required after pruning
/// already-installed nodes.
///
/// A dependency survives when it is requested directly as a source or is
/// declared by a surviving graph node. With `--deps-only`, dependencies of
/// skipped (already-installed) nodes survive as well, because the caller
/// explicitly wants dependencies installed even when the direct package is
/// already present.
fn filter_relevant_non_zoi_deps(
    non_zoi_deps: Vec<String>,
    sources_to_process: &[String],
    graph: &resolver::DependencyGraph,
    skipped_dep_strings: &[String],
    deps_only: bool
) -> Vec<String> {
    fn insert_external(
        valid: &mut HashSet<String>,
        dep_strings: impl IntoIterator<Item = impl AsRef<str>>
    ) {
        for dep_str in dep_strings {
            if let Ok(dep) = zoi_deps::parse_dependency_string(dep_str.as_ref())
                && dep.manager != "zoi"
            {
                valid.insert(dep_str.as_ref().to_string());
            }
        }
    }

    let mut valid_non_zoi_deps = HashSet::new();
    insert_external(&mut valid_non_zoi_deps, sources_to_process);
    insert_external(
        &mut valid_non_zoi_deps,
        graph
            .nodes
            .values()
            .flat_map(|node| node.dependencies.clone())
    );
    if deps_only {
        insert_external(&mut valid_non_zoi_deps, skipped_dep_strings);
    }
    non_zoi_deps
        .into_iter()
        .filter(|dep| valid_non_zoi_deps.contains(dep))
        .collect()
}

impl<'a> Orchestrator<'a> {
    /// Creates a new orchestrator with the given options.
    pub fn new(options: InstallOptions<'a>) -> Self {
        Self { options }
    }

    /// Runs the installation for the given sources.
    ///
    /// # Errors
    ///
    /// Returns an error if the installation fails at any stage.
    ///
    /// # Panics
    ///
    /// Panics if any of the internal mutexes (failed packages, prepared nodes,
    /// etc.) are poisoned.
    pub fn run(&self, sources: &[String], repo: Option<String>) -> Result<()> {
        let options = &self.options;
        if options.plan_json && !options.dry_run {
            return Err(anyhow!("--plan-json requires --dry-run"));
        }
        util::set_download_retry_attempts(options.retry);

        if sources.is_empty() && repo.is_none() && !options.frozen {
            return Err(anyhow!("No packages specified for installation."));
        }

        let mut scope_override = Some(options.scope);

        if options.frozen {
            if repo.is_some() || !sources.is_empty() {
                return Err(anyhow!(
                    "--frozen can only be used without explicit sources or \
                     --repo."
                ));
            }
            if options.save {
                return Err(anyhow!(
                    "--save cannot be used with --frozen because the lockfile \
                     must remain unchanged."
                ));
            }
            if !std::path::Path::new("zoi.lua").exists() {
                return Err(anyhow!(
                    "--frozen requires a local zoi.lua in the current project."
                ));
            }
            if !std::path::Path::new("zoi.lock").exists() {
                return Err(anyhow!(
                    "--frozen requires zoi.lock. Generate it first with a \
                     normal project install."
                ));
            }
            if let Some(scope) = scope_override
                && scope != types::Scope::Project
            {
                return Err(anyhow!(
                    "--frozen is only supported for project scope installs."
                ));
            }
            scope_override = Some(types::Scope::Project);
            zoi_core::frozen::set_frozen(true);
        }

        let lockfile_exists = sources.is_empty()
            && repo.is_none()
            && std::path::Path::new("zoi.lock").exists()
            && std::path::Path::new("zoi.lua").exists();

        let mut sources_to_process: Vec<String> = sources.to_vec();
        let mut _is_project_install = false;
        let mut frozen_packages = None;

        if options.frozen {
            let lockfile = project::lockfile::read_zoi_lock()?;
            let locked_packages = project::lockfile::locked_packages(&lockfile);
            sources_to_process = locked_packages
                .iter()
                .map(|entry| entry.source.clone())
                .collect();
            if sources_to_process.is_empty() {
                return Err(anyhow!(
                    "zoi.lock is empty. Cannot continue with --frozen."
                ));
            }
            frozen_packages = Some(locked_packages);
            if !options.plan_json {
                println!(
                    "{} --frozen enabled. Installing pinned lockfile sources \
                     only...",
                    "::".bold().blue()
                );
            }
            _is_project_install = true;
        } else if sources.is_empty() && repo.is_none() {
            if std::path::Path::new("zoi.lua").exists() {
                if let Ok(config) = project::config::load() {
                    let config_file = "zoi.lua";
                    if !options.plan_json {
                        if lockfile_exists {
                            println!(
                                "{} zoi.lock found. Installing from {} then \
                                 verifying...",
                                "::".bold().blue(),
                                config_file
                            );
                        } else {
                            println!(
                                "{} Installing project packages from {}...",
                                "::".bold().blue(),
                                config_file
                            );
                        }
                    }
                    sources_to_process.clone_from(&config.pkgs);
                    if scope_override.is_none() {
                        scope_override = Some(types::Scope::Project);
                    }
                    _is_project_install = true;
                }
            } else if let Some(pm) = options.plugin_manager
                && pm.trigger_project_install_hook()?
            {
                return Ok(());
            }
        }

        if let Some(_repo_spec) = repo {
            if scope_override == Some(types::Scope::Project) {
                return Err(anyhow!(
                    "Installing from a repository to a project scope is not \
                     supported."
                ));
            }

            return Err(anyhow!(
                "Repository installation not implemented in Orchestrator yet."
            ));
        }

        if sources_to_process.is_empty() {
            return Ok(());
        }

        if options.purl {
            let mut resolved_purls = Vec::new();
            for source in &sources_to_process {
                if !options.plan_json {
                    println!(
                        "{} Fetching PURL package '{}'...",
                        "::".bold().blue(),
                        source
                    );
                }
                let ident = zoi_purl::fetch_and_store_purl_package(source)?;
                resolved_purls.push(ident);
            }
            sources_to_process = resolved_purls;
        }

        let config = zoi_core::config::read_config().unwrap_or_default();
        let jobs = config.jobs.unwrap_or(3);
        rayon::ThreadPoolBuilder::new()
            .num_threads(jobs)
            .build_global()
            .ok();

        let failed_packages = Mutex::new(Vec::new());
        let mut temp_files = Vec::new();
        let mut final_sources = Vec::new();

        for source in &sources_to_process {
            if std::path::Path::new(source)
                .extension()
                .is_some_and(|ext| ext.eq_ignore_ascii_case("lock"))
            {
                lockfile::process_lockfile(
                    source,
                    &mut final_sources,
                    &mut temp_files,
                    scope_override.unwrap_or(types::Scope::User)
                )?;
            } else {
                final_sources.push(source.clone());
            }
        }

        let successfully_installed_sources = Mutex::new(Vec::new());
        let installed_manifests = Mutex::new(Vec::new());

        // --- Phase 2: Dependency Resolution ---
        let (mut graph, mut non_zoi_deps) =
            if let Some(locked_packages) = frozen_packages.as_ref() {
                resolver::build_graph_from_locked_packages(
                    locked_packages,
                    scope_override,
                    options.plan_json,
                    options.yes
                )?
            } else {
                resolver::resolve_dependency_graph(
                    &final_sources,
                    scope_override,
                    options.force,
                    options.yes,
                    options.all_optional,
                    options.build_type,
                    options.plan_json,
                    options.project_config.clone()
                )?
            };

        let config = zoi_core::config::read_config().unwrap_or_default();
        let mut skipped_existing_count = 0usize;
        if !options.force {
            let mut to_remove = Vec::new();
            for (pkg_id, node) in &graph.nodes {
                // The request is built directly from the node instead of
                // round-tripping through a source string because parsing
                // lowercases identifiers and drops sub-package information,
                // which made already-installed detection unreliable.
                let request_base = zoi_resolver::resolve::PackageRequest {
                    handle: None,
                    repo: (!node.pkg.repo.is_empty())
                        .then(|| node.pkg.repo.to_lowercase()),
                    name: node.pkg.name.to_lowercase(),
                    sub_package: node.sub_package.clone(),
                    version_spec: None
                };

                let target_scope = scope_override.unwrap_or(node.pkg.scope);
                let installed = local::find_installed_manifests_matching(
                    &request_base,
                    target_scope
                )?;

                if installed.is_empty() {
                    // Not installed in the requested scope. If it exists in
                    // another scope, inform the user but continue installing.
                    let other_scopes = [
                        types::Scope::Project,
                        types::Scope::User,
                        types::Scope::System
                    ]
                    .into_iter()
                    .filter(|s| *s != target_scope);
                    for other_scope in other_scopes {
                        if !local::find_installed_manifests_matching(
                            &request_base,
                            other_scope
                        )?
                        .is_empty()
                        {
                            let display_name = ux::format_display_name(
                                &node.registry_handle,
                                &node.pkg.repo,
                                &node.pkg.name,
                                node.sub_package.as_deref(),
                                &config
                            );
                            if !options.plan_json {
                                println!(
                                    "{} Package '{}' is already installed in \
                                     {:?} scope. Installing into {:?} scope \
                                     anyway.",
                                    "::".bold().blue(),
                                    display_name.cyan(),
                                    other_scope,
                                    target_scope
                                );
                            }
                            break;
                        }
                    }
                    continue;
                }

                let already_at_target = installed.iter().any(|m| {
                    m.version == node.version && m.revision == node.revision
                });

                let display_name = ux::format_display_name(
                    &node.registry_handle,
                    &node.pkg.repo,
                    &node.pkg.name,
                    node.sub_package.as_deref(),
                    &config
                );
                if !options.plan_json {
                    // With --deps-only the direct package is intentionally
                    // skipped while its dependencies are still installed, so
                    // the update hint would only mislead.
                    let is_direct =
                        matches!(node.reason, types::InstallReason::Direct);
                    if already_at_target {
                        let full_spec =
                            format!("{}@{}", display_name, node.version);
                        if options.deps_only && is_direct {
                            println!(
                                "{} Package '{}' is already installed. \
                                 Installing its dependencies only \
                                 (--deps-only).",
                                "::".bold().green(),
                                full_spec.cyan()
                            );
                        } else {
                            println!(
                                "{} Package '{}' is already installed. \
                                 Skipping.",
                                "::".bold().green(),
                                full_spec.cyan()
                            );
                        }
                    } else {
                        let current_version = installed
                            .first()
                            .map(|m| m.version.as_str())
                            .unwrap_or_default();

                        let current_spec =
                            format!("{display_name}@{current_version}");
                        let available_spec =
                            format!("{}@{}", display_name, node.version);

                        println!(
                            "{} Package '{}' is already installed (available: \
                             {}).",
                            "::".bold().yellow(),
                            current_spec.cyan(),
                            available_spec.cyan()
                        );
                    }
                    if !(options.deps_only && is_direct) {
                        println!(
                            "   {} To update it, run: {}",
                            "Hint:".bold().blue(),
                            format!("zoi update {}", node.pkg.name).italic()
                        );
                    }
                }
                to_remove.push(pkg_id.clone());
            }
            skipped_existing_count = to_remove.len();

            // Snapshot the dependency lists of skipped nodes before removal:
            // with --deps-only the caller explicitly wants dependencies
            // installed even when the direct package is already present.
            let skipped_dep_strings: Vec<String> = if options.deps_only {
                to_remove
                    .iter()
                    .filter_map(|id| graph.nodes.get(id))
                    .flat_map(|node| node.dependencies.clone())
                    .collect()
            } else {
                Vec::new()
            };

            for pkg_id in to_remove {
                graph.nodes.remove(&pkg_id);
                if let Some(children) = graph.adj.remove(&pkg_id)
                    && let Some(root_children) = graph.adj.get_mut("$root")
                {
                    for child in children {
                        root_children.insert(child);
                    }
                }
                if let Some(root_children) = graph.adj.get_mut("$root") {
                    root_children.remove(&pkg_id);
                }
            }

            non_zoi_deps = filter_relevant_non_zoi_deps(
                non_zoi_deps,
                &sources_to_process,
                &graph,
                &skipped_dep_strings,
                options.deps_only
            );
        }

        if graph.nodes.is_empty() && non_zoi_deps.is_empty() {
            println!("\nAll requested packages are already installed.");
            return Ok(());
        }

        if !options.dry_run {
            if let Some(pm) = options.plugin_manager {
                pm.set_context(scope_override.unwrap_or_default())?;
            }
            for node in graph.nodes.values() {
                if let Some(pm) = options.plugin_manager {
                    let pkg_val = pm
                        .lua
                        .to_value(&node.pkg)
                        .map_err(|e: mlua::Error| anyhow!(e.to_string()))?;
                    pm.trigger_hook("on_pre_install", Some(&pkg_val))?;
                }
            }
        }

        let mut direct_packages = Vec::new();
        let mut dependencies = Vec::new();

        for node in graph.nodes.values() {
            if matches!(node.reason, types::InstallReason::Direct) {
                direct_packages.push(node);
            } else {
                dependencies.push(node);
            }
        }

        direct_packages.sort_by(|a, b| a.pkg.name.cmp(&b.pkg.name));
        dependencies.sort_by(|a, b| a.pkg.name.cmp(&b.pkg.name));

        for node in graph.nodes.values() {
            cli_utils::print_repo_warning(&node.pkg.repo);
        }

        // --- Phase 3: Safety & Compliance Checks ---
        if !options.plan_json {
            println!("{} Looking for conflicts...", "::".bold().blue());
        }
        let packages_to_install: Vec<&types::Package> =
            graph.nodes.values().map(|n| &n.pkg).collect();

        if !options.dry_run {
            preflight::check_for_conflicts(&packages_to_install, options.yes)?;
            for pkg in &packages_to_install {
                if !util::display_updates(pkg, options.yes)? {
                    return Err(anyhow!("Installation aborted by user."));
                }
            }
            preflight::check_policy_compliance(&graph)?;
            preflight::check_scope_compliance(&graph)?;
            preflight::check_zoios_compliance(&graph)?;
            preflight::check_for_vulnerabilities(&graph, options.yes)?;

            let m_for_conflict_check = MultiProgress::new();
            if options.plan_json {
                m_for_conflict_check
                    .set_draw_target(indicatif::ProgressDrawTarget::hidden());
            }
            preflight::check_file_conflicts(
                &graph,
                options.yes,
                &m_for_conflict_check
            )?;
            let _ = m_for_conflict_check.clear();
        }

        if !options.plan_json {
            println!("{} Checking available disk space...", "::".bold().blue());
        }
        let install_plan = plan::create_install_plan(
            &graph.nodes,
            options.build_type,
            options.build
        )?;

        let mut total_download_size: u64 = 0;
        let mut total_installed_size: u64 = 0;
        let mut unique_downloads = HashSet::new();

        for (id, node) in &graph.nodes {
            match install_plan.get(id) {
                Some(plan::InstallAction::DownloadAndInstall(details)) => {
                    if unique_downloads.insert(details.info.final_url.clone()) {
                        total_download_size += details.download_size;
                    }
                    total_installed_size += if details.installed_size > 0 {
                        details.installed_size
                    } else {
                        node.pkg.installed_size.unwrap_or(0)
                    };
                }
                Some(plan::InstallAction::BuildAndInstall) => {
                    total_installed_size +=
                        node.pkg.installed_size.unwrap_or(0);
                }
                _ => {}
            }
        }

        if options.plan_json {
            let mut packages = Vec::new();
            for (id, node) in &graph.nodes {
                let action_name = match install_plan.get(id) {
                    Some(plan::InstallAction::DownloadAndInstall(_)) => {
                        "download"
                    }
                    Some(plan::InstallAction::InstallFromArchive(_)) => {
                        "archive"
                    }
                    Some(plan::InstallAction::BuildAndInstall) => "build",
                    None => "unknown"
                };
                let reason = match &node.reason {
                    types::InstallReason::Direct => "direct".to_string(),
                    types::InstallReason::Dependency { parent } => {
                        format!("dependency:{parent}")
                    }
                };
                packages.push(json!({
                    "id": id,
                    "name": node.pkg.name,
                    "version": node.version,
                    "revision": node.revision,
                    "sub_package": node.sub_package,
                    "repo": node.pkg.repo,
                    "registry": node.registry_handle,
                    "reason": reason,
                    "action": action_name,
                    "source": node.source,
                }));
            }

            let plan_data = json!({
                "dry_run": options.dry_run,
                "frozen": options.frozen,
                "retry_attempts": options.retry,
                "scope": format!("{:?}", scope_override.unwrap_or(types::Scope::User)),
                "totals": {
                    "direct_packages": direct_packages.len(),
                    "dependencies": dependencies.len() + non_zoi_deps.len(),
                    "download_bytes": total_download_size,
                    "installed_bytes": total_installed_size,
                    "skipped_existing": skipped_existing_count,
                },
                "packages": packages,
                "non_zoi_dependencies": non_zoi_deps,
            });
            println!("{}", serde_json::to_string_pretty(&plan_data)?);
            return Ok(());
        }

        if options.dry_run {
            println!(
                "\n{} Dry-run: installation plan above would be executed.",
                "::".bold().yellow()
            );
            return Ok(());
        }

        // --- Phase 4: Transactional Execution ---
        let install_path =
            local::get_store_base_dir(scope_override.unwrap_or_default())?;
        std::fs::create_dir_all(&install_path)?;

        let available_space =
            fs2::available_space(&install_path).unwrap_or(u64::MAX);

        if total_installed_size > available_space {
            return Err(anyhow!(
                "Not enough disk space. Required: {}, Available: {}",
                zoi_core::utils::format_bytes(total_installed_size),
                zoi_core::utils::format_bytes(available_space)
            ));
        }

        let config = zoi_core::config::read_config().unwrap_or_default();

        println!(
            "\n{} Packages ({})",
            "::".bold().blue(),
            direct_packages.len()
        );
        let direct_list: Vec<_> = direct_packages
            .iter()
            .map(|n| {
                let display_name = ux::format_display_name(
                    &n.registry_handle,
                    &n.pkg.repo,
                    &n.pkg.name,
                    n.sub_package.as_deref(),
                    &config
                );
                let version_display = if n.revision == "1" {
                    n.version.clone()
                } else {
                    format!("{}-{}", n.version, n.revision)
                };
                format!("{display_name}@{version_display}")
                    .cyan()
                    .to_string()
            })
            .collect();
        println!(" {}", direct_list.join("  "));

        if options.verbose {
            println!("\n{} Package origins", "::".bold().blue());
            let mut direct_entries: Vec<_> = graph
                .nodes
                .iter()
                .filter(|(_, node)| {
                    matches!(node.reason, types::InstallReason::Direct)
                })
                .collect();
            direct_entries.sort_by(|a, b| a.1.pkg.name.cmp(&b.1.pkg.name));
            for (id, node) in direct_entries {
                let action_name = match install_plan.get(id) {
                    Some(plan::InstallAction::DownloadAndInstall(_)) => {
                        "download"
                    }
                    Some(plan::InstallAction::InstallFromArchive(_)) => {
                        "archive"
                    }
                    Some(plan::InstallAction::BuildAndInstall) => "build",
                    None => "unknown"
                };
                let origin = crate::cmd::ux::classify_source_origin(
                    &node.source,
                    action_name
                );
                let display_name = ux::format_display_name(
                    &node.registry_handle,
                    &node.pkg.repo,
                    &node.pkg.name,
                    node.sub_package.as_deref(),
                    &config
                );
                let version_display = if node.revision == "1" {
                    node.version.clone()
                } else {
                    format!("{}-{}", node.version, node.revision)
                };
                println!(
                    "  - {}@{} -> {} ({})",
                    display_name.cyan(),
                    version_display,
                    origin.as_str(),
                    action_name
                );
            }
        }

        if !dependencies.is_empty() || !non_zoi_deps.is_empty() {
            println!(
                "\n{} Dependencies ({})",
                "::".bold().blue(),
                dependencies.len() + non_zoi_deps.len()
            );
            let mut dep_list = Vec::new();
            for n in &dependencies {
                let display_name = ux::format_display_name(
                    &n.registry_handle,
                    &n.pkg.repo,
                    &n.pkg.name,
                    n.sub_package.as_deref(),
                    &config
                );
                let version_display = if n.revision == "1" {
                    n.version.clone()
                } else {
                    format!("{}-{}", n.version, n.revision)
                };
                dep_list.push(
                    format!("zoi:{display_name}@{version_display}")
                        .dimmed()
                        .to_string()
                );
            }
            for d in &non_zoi_deps {
                dep_list.push(d.dimmed().to_string());
            }
            println!(" {}", dep_list.join("  "));
        }

        if total_download_size > 0 {
            println!(
                "\nTotal Download Size:  {}",
                zoi_core::utils::format_bytes(total_download_size)
            );
        }
        if total_installed_size > 0 {
            println!(
                "Total Installed Size: {}",
                zoi_core::utils::format_bytes(total_installed_size)
            );
        }

        if options.verbose {
            let preflight =
                crate::cmd::ux::PreflightSummary::new("Install preflight")
                    .row(
                        "Scope",
                        format!(
                            "{:?}",
                            scope_override.unwrap_or(types::Scope::User)
                        )
                    )
                    .row("Frozen lockfile", options.frozen.to_string())
                    .row("Deps only", options.deps_only.to_string())
                    .row("Retry attempts", options.retry.to_string())
                    .row("Direct packages", direct_packages.len().to_string())
                    .row(
                        "Dependencies",
                        (dependencies.len() + non_zoi_deps.len()).to_string()
                    )
                    .row(
                        "Download size",
                        zoi_core::utils::format_bytes(total_download_size)
                    )
                    .row(
                        "Installed size",
                        zoi_core::utils::format_bytes(total_installed_size)
                    );
            crate::cmd::ux::print_preflight(&preflight);
        }

        if options.explain {
            let mut report = ux::ExplainReport::new("Install explanation");
            let mut sorted_nodes: Vec<_> = graph.nodes.iter().collect();
            sorted_nodes.sort_by(|a, b| a.1.pkg.name.cmp(&b.1.pkg.name));
            for (id, node) in sorted_nodes {
                let action = match install_plan.get(id) {
                    Some(plan::InstallAction::DownloadAndInstall(_)) => {
                        "download"
                    }
                    Some(plan::InstallAction::InstallFromArchive(_)) => {
                        "archive"
                    }
                    Some(plan::InstallAction::BuildAndInstall) => {
                        "build from source"
                    }
                    None => "unknown"
                };
                let display_name = ux::format_display_name(
                    &node.registry_handle,
                    &node.pkg.repo,
                    &node.pkg.name,
                    node.sub_package.as_deref(),
                    &config
                );
                match &node.reason {
                    types::InstallReason::Direct => {
                        report = report.item(
                            format!("{display_name}@{}", node.version),
                            "explicitly requested",
                            vec![
                                format!("action: {action}"),
                                format!("source: {}", node.source),
                            ]
                        );
                    }
                    types::InstallReason::Dependency { parent } => {
                        report = report.item(
                            format!("{display_name}@{}", node.version),
                            format!("required by {parent}"),
                            Vec::new()
                        );
                    }
                }
            }
            if skipped_existing_count > 0 {
                report = report.item(
                    format!("{skipped_existing_count} already installed"),
                    "skipped (identical version and revision already present)",
                    Vec::new()
                );
            }
            for dep in &non_zoi_deps {
                report = report.item(
                    dep.clone(),
                    "handled by an external package manager",
                    Vec::new()
                );
            }
            if options.deps_only {
                report = report.item(
                    "--deps-only",
                    "direct packages will not be installed",
                    Vec::new()
                );
            }
            ux::print_explain(&report);
        }

        let yes = options.yes;
        if !zoi_core::utils::ask_for_confirmation(
            "\nProceed with installation?",
            yes
        ) {
            return Ok(());
        }

        // Pre-install external (non-zoi) dependencies through their own
        // package managers, mirroring `update.rs`. Without this they would be
        // listed in the plan but never installed, which is exactly what made
        // `--deps-only` a silent no-op.
        if !non_zoi_deps.is_empty() {
            println!(
                "\n{} Installing external dependencies...",
                "::".bold().blue()
            );
            let m_ext = MultiProgress::new();
            let processed_deps = Mutex::new(HashSet::new());
            let mut installed_deps_ext = Vec::new();
            for dep_str in &non_zoi_deps {
                let dep =
                    crate::pkg::dependencies::parse_dependency_string(dep_str)?;
                crate::pkg::install::dep_install::install_dependency(
                    &dep,
                    "install",
                    scope_override.unwrap_or_default(),
                    yes,
                    options.all_optional,
                    &processed_deps,
                    &mut installed_deps_ext,
                    Some(&m_ext)
                )?;
            }
        }

        let stages = graph.toposort()?;
        let transaction = Mutex::new(transaction::begin()?);
        let transaction_id = transaction
            .lock()
            .expect("Transaction mutex poisoned")
            .id
            .clone();
        let dependency_installed_count = AtomicUsize::new(0);

        println!("\n{} Preparing packages...", "::".bold().blue());
        let m_prep = MultiProgress::new();
        let prepared_nodes = Mutex::new(HashMap::new());

        let build_type = options.build_type;
        let verbose = options.verbose;
        // `--force` re-installs and also re-downloads archives instead of
        // trusting the cache, so a re-published upstream archive replaces
        // stale cached bytes.
        let force_redownload = options.force;

        stages
            .par_iter()
            .flatten()
            .try_for_each(|pkg_id| -> Result<()> {
                let node = graph.nodes.get(pkg_id).ok_or_else(|| {
                    anyhow!(
                        "Package node '{pkg_id}' missing from graph during \
                         preparation"
                    )
                })?;
                let action = install_plan.get(pkg_id).ok_or_else(|| {
                    anyhow!(
                        "Install action missing for package '{pkg_id}' during \
                         preparation"
                    )
                })?;

                let prepared = installer::prepare_node(
                    node,
                    action,
                    Some(&m_prep),
                    build_type,
                    verbose,
                    force_redownload
                )?;

                let mut lock = prepared_nodes.lock().map_err(|e| {
                    anyhow!(
                        "Prepared nodes mutex poisoned during preparation: {e}"
                    )
                })?;
                lock.insert(pkg_id.clone(), prepared);
                Ok(())
            })?;

        if !dependencies.is_empty() || !non_zoi_deps.is_empty() {
            println!("\n{} Installing dependencies...", "::".bold().blue());
            let m_deps = MultiProgress::new();

            for stage in &stages {
                stage.par_iter().try_for_each(|pkg_id| -> Result<()> {
                    let node = graph.nodes.get(pkg_id).ok_or_else(|| {
                        anyhow!(
                            "Package node '{pkg_id}' missing from graph \
                             during installation"
                        )
                    })?;
                    if matches!(node.reason, types::InstallReason::Direct) {
                        return Ok(());
                    }

                    let prepared = {
                        let lock = prepared_nodes.lock().map_err(|e| {
                            anyhow!(
                                "Prepared nodes mutex poisoned during \
                                 dependency install: {e}"
                            )
                        })?;
                        lock.get(pkg_id).cloned().ok_or_else(|| {
                            anyhow!("Prepared node missing for: {pkg_id}")
                        })?
                    };

                    match installer::install_prepared_node(
                        node,
                        &prepared,
                        Some(&m_deps),
                        yes,
                        true,
                        true,
                        verbose
                    ) {
                        Ok(manifest) => {
                            dependency_installed_count
                                .fetch_add(1, Ordering::Relaxed);
                            let mut tx_lock =
                                transaction.lock().map_err(|e| {
                                    anyhow!(
                                        "Transaction mutex poisoned during \
                                         installation: {e}"
                                    )
                                })?;
                            if let Err(e) = transaction::record_operation(
                                &mut tx_lock,
                                types::TransactionOperation::Install {
                                    manifest: Box::new(manifest)
                                }
                            ) {
                                return Err(anyhow!(
                                    "Transaction recording failed: {e}"
                                ));
                            }
                        }
                        Err(e) => {
                            failed_packages
                                .lock()
                                .expect("Failed packages mutex poisoned")
                                .push(node.pkg.name.clone());
                            eprintln!(
                                "Error installing {}: {}",
                                node.pkg.name, e
                            );
                        }
                    }
                    Ok(())
                })?;
            }
        }

        if options.deps_only {
            println!(
                "\n{} Skipping direct packages (--deps-only).",
                "::".bold().yellow()
            );
        } else {
            println!("\n{} Installing packages...", "::".bold().blue());
            let m_pkg = MultiProgress::new();

            for stage in &stages {
                let mut stage_direct_ids = Vec::new();
                for pkg_id in stage {
                    if let Some(node) = graph.nodes.get(pkg_id)
                        && matches!(node.reason, types::InstallReason::Direct)
                    {
                        let name = if let Some(sub) = &node.sub_package {
                            format!("{}:{}", node.pkg.name, sub)
                        } else {
                            node.pkg.name.clone()
                        };
                        let version_display = if node.revision == "1" {
                            node.version.clone()
                        } else {
                            format!("{}-{}", node.version, node.revision)
                        };
                        println!("@{name}:{version_display}");
                        stage_direct_ids.push(pkg_id.clone());
                    }
                }

                if stage_direct_ids.is_empty() {
                    continue;
                }

                let res = stage_direct_ids.par_iter().try_for_each(
                    |pkg_id| -> Result<()> {
                        let node =
                            graph.nodes.get(pkg_id).ok_or_else(|| {
                                anyhow!(
                                    "Package node '{pkg_id}' missing from \
                                     graph during final installation"
                                )
                            })?;

                        let prepared = {
                            let lock = prepared_nodes.lock().map_err(|e| {
                                anyhow!(
                                    "Prepared nodes mutex poisoned during \
                                     package install: {e}"
                                )
                            })?;
                            lock.get(pkg_id).cloned().ok_or_else(|| {
                                anyhow!("Prepared node missing for: {pkg_id}")
                            })?
                        };

                        match installer::install_prepared_node(
                            node,
                            &prepared,
                            Some(&m_pkg),
                            yes,
                            true,
                            true,
                            verbose
                        ) {
                            Ok(manifest) => {
                                installed_manifests
                                    .lock()
                                    .expect(
                                        "Installed manifests mutex poisoned"
                                    )
                                    .push(manifest.clone());
                                let mut tx_lock =
                                    transaction.lock().map_err(|e| {
                                        anyhow!(
                                            "Transaction mutex poisoned \
                                             during direct package \
                                             installation: {e}"
                                        )
                                    })?;
                                transaction::record_operation(
                                    &mut tx_lock,
                                    types::TransactionOperation::Install {
                                        manifest: Box::new(manifest)
                                    }
                                )?;
                                successfully_installed_sources
                                    .lock()
                                    .expect(
                                        "Successfully installed sources mutex \
                                         poisoned"
                                    )
                                    .push(node.source.clone());
                                Ok(())
                            }
                            Err(e) => {
                                failed_packages
                                    .lock()
                                    .expect("Failed packages mutex poisoned")
                                    .push(node.pkg.name.clone());
                                eprintln!(
                                    "Error installing {}: {}",
                                    node.pkg.name, e
                                );
                                Err(e)
                            }
                        }
                    }
                );

                if res.is_err() {
                    break;
                }
            }
        }

        let failed = failed_packages
            .lock()
            .expect("Failed packages mutex poisoned");
        if !failed.is_empty() {
            println!("\n{} Rolling back changes...", "::".bold().yellow());
            transaction::rollback(&transaction_id)?;
            return Err(anyhow!(
                "Installation failed for: {}",
                failed.join(", ")
            ));
        }

        // Run builtin/global transaction hooks (e.g. font-cache, ldconfig)
        // exactly like update/uninstall do. Without this, `zoi install`
        // never triggers PostTransaction hooks.
        if let Ok(modified_files) =
            transaction::get_modified_files(&transaction_id)
        {
            let modified_packages =
                transaction::get_modified_packages(&transaction_id)
                    .unwrap_or_default();
            let _ = crate::pkg::hooks::global::run_global_hooks(
                crate::pkg::hooks::global::HookWhen::PostTransaction,
                &modified_files,
                &modified_packages,
                "install",
                scope_override.unwrap_or_default()
            );
        }

        if let Err(e) = transaction::commit(&transaction_id) {
            eprintln!("Warning: Failed to commit transaction: {e}");
        }

        let installed_manifests_vec = installed_manifests
            .lock()
            .expect("Installed manifests mutex poisoned")
            .clone();
        for manifest in &installed_manifests_vec {
            if let Some(pm) = options.plugin_manager {
                let pkg_val = pm
                    .lua
                    .to_value(manifest)
                    .map_err(|e: mlua::Error| anyhow!(e.to_string()))?;
                pm.trigger_hook_nonfatal("on_post_install", Some(&pkg_val));
            }
        }

        println!("\n{} Installation complete!", "Success:".green().bold());
        Ok(())
    }
}

#[cfg(test)]
mod tests {
    use super::*;

    fn test_node(deps: Vec<String>) -> resolver::InstallNode {
        resolver::InstallNode {
            pkg: types::Package::default(),
            version: "1.0.0".to_string(),
            revision: "1".to_string(),
            sub_package: None,
            repo_type: "official".to_string(),
            description: String::new(),
            reason: types::InstallReason::Direct,
            source: "test".to_string(),
            registry_handle: "local".to_string(),
            chosen_options: Vec::new(),
            chosen_optionals: Vec::new(),
            dependencies: deps,
            git_sha: None
        }
    }

    fn test_graph(
        nodes: Vec<(&str, Vec<String>)>
    ) -> resolver::DependencyGraph {
        let mut graph = resolver::DependencyGraph::new();
        for (id, deps) in nodes {
            graph.nodes.insert(id.to_string(), test_node(deps));
        }
        graph
    }

    #[test]
    fn deps_only_keeps_external_deps_of_skipped_nodes() {
        let graph = test_graph(vec![]);
        let kept = filter_relevant_non_zoi_deps(
            vec!["native:git".to_string()],
            &["@zillowe/gct".to_string()],
            &graph,
            &["native:git".to_string()],
            true
        );
        assert_eq!(kept, vec!["native:git".to_string()]);
    }

    #[test]
    fn default_mode_drops_external_deps_of_skipped_nodes() {
        let graph = test_graph(vec![]);
        let kept = filter_relevant_non_zoi_deps(
            vec!["native:git".to_string()],
            &["@zillowe/gct".to_string()],
            &graph,
            &["native:git".to_string()],
            false
        );
        assert!(kept.is_empty());
    }

    #[test]
    fn surviving_nodes_keep_their_external_deps_in_both_modes() {
        for deps_only in [false, true] {
            let graph = test_graph(vec![(
                "direct",
                vec!["pacman:go".to_string(), "zoi:helper".to_string()]
            )]);
            let kept = filter_relevant_non_zoi_deps(
                vec!["pacman:go".to_string(), "native:git".to_string()],
                &["pkg".to_string()],
                &graph,
                &["native:git".to_string()],
                deps_only
            );
            // `pacman:go` comes from a surviving node in both modes;
            // `native:git` only belongs to a skipped node.
            if deps_only {
                assert_eq!(
                    kept,
                    vec!["pacman:go".to_string(), "native:git".to_string()]
                );
            } else {
                assert_eq!(kept, vec!["pacman:go".to_string()]);
            }
        }
    }

    #[test]
    fn zoi_managed_strings_are_never_external_deps() {
        let graph = test_graph(vec![]);
        let kept = filter_relevant_non_zoi_deps(
            vec!["zoi:helper".to_string()],
            &["pkg".to_string()],
            &graph,
            &["zoi:helper".to_string()],
            true
        );
        assert!(kept.is_empty());
    }

    #[test]
    fn direct_external_sources_are_always_kept() {
        let graph = test_graph(vec![]);
        for deps_only in [false, true] {
            let kept = filter_relevant_non_zoi_deps(
                vec!["pacman:go".to_string()],
                &["pacman:go".to_string()],
                &graph,
                &[],
                deps_only
            );
            assert_eq!(kept, vec!["pacman:go".to_string()]);
        }
    }
}