Expand description
Utilities for working with SAF files stored on disk.
To read and write standard SAF files, see the angsd_saf crate. This module contains
utilities based on that for doing SFS estimation from files kept on disk.
Modules§
- shuffle
- Read and write pseudo-shuffled SAF format.
Structs§
- Enumerate
- A type that keeps track of how many sites have been read from the underlying source.
- Intersect
- An intersecting SAF reader.
- Take
- A type that limits the number of sites that can be read from the underlying source.
- V3
- A marker type for the SAF version 3.
- V4
- A marker type for the SAF version 4.
Enums§
- Read
Status - A read status.
Traits§
- Read
Site - A type that can read SAF sites from a source.
- Rewind
- A reader type that can return to the beginning of the data.
- Version
- A type that describes a SAF file version.
Type Aliases§
- Id
- A SAF index contig ID.