1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330
//! Scatters.
use grammar::v1::Rule;
use nonempty::NonEmpty;
use pest::iterators::Pair;
use wdl_grammar as grammar;
use wdl_macros::check_node;
use wdl_macros::dive_one;
use wdl_macros::unwrap_one;
use crate::v1::document::expression;
use crate::v1::document::identifier::singular;
use crate::v1::document::identifier::singular::Identifier;
use crate::v1::document::workflow::execution::statement;
use crate::v1::document::workflow::execution::Statement;
use crate::v1::document::Expression;
mod builder;
pub use builder::Builder;
/// An error related to [`Scatter`].
#[derive(Debug)]
pub enum Error {
/// A builder error.
Builder(builder::Error),
/// An expression error.
Expression(expression::Error),
/// An identifier error.
Identifier(singular::Error),
/// A workflow execution statement error.
Statement(statement::Error),
}
impl std::fmt::Display for Error {
fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
match self {
Error::Builder(err) => write!(f, "builder error: {err}"),
Error::Expression(err) => write!(f, "expression error: {err}"),
Error::Identifier(err) => write!(f, "identifier error: {err}"),
Error::Statement(err) => {
write!(f, "workflow execution statement error: {err}")
}
}
}
}
impl std::error::Error for Error {}
/// A scatter statement.
#[derive(Clone, Debug, Eq, PartialEq)]
pub struct Scatter {
/// The entities being scattered over.
iterable: Expression,
/// The workflow execution statements for each entity.
statements: Option<NonEmpty<Box<Statement>>>,
/// The variable name for each entity.
variable: Identifier,
}
impl Scatter {
/// Gets the iterables from the [`Scatter`] by reference.
///
/// # Examples
///
/// ```
/// use ast::v1::document::expression::Literal;
/// use ast::v1::document::identifier::singular;
/// use ast::v1::document::workflow::execution::statement::call;
/// use ast::v1::document::workflow::execution::statement::scatter::Builder;
/// use ast::v1::document::workflow::execution::Statement;
/// use ast::v1::document::Expression;
/// use ast::v1::document::Identifier;
/// use wdl_ast as ast;
///
/// let variable = singular::Identifier::try_from("entity")?;
/// let iterable = Expression::Literal(Literal::Identifier(singular::Identifier::try_from(
/// "entities",
/// )?));
/// let statement = Statement::Call(
/// call::Builder::default()
/// .name(Identifier::from(singular::Identifier::try_from(
/// "hello_world",
/// )?))?
/// .try_build()?,
/// );
///
/// let scatter = Builder::default()
/// .variable(variable)?
/// .iterable(iterable.clone())?
/// .push_workflow_execution_statement(statement)
/// .try_build()?;
///
/// assert_eq!(scatter.iterable(), &iterable);
///
/// # Ok::<(), Box<dyn std::error::Error>>(())
/// ```
pub fn iterable(&self) -> &Expression {
&self.iterable
}
/// Gets the [workflow execution statement(s)](Statement) from this
/// [`Scatter`] by reference (if they exist).
///
/// # Examples
///
/// ```
/// use ast::v1::document::expression::Literal;
/// use ast::v1::document::identifier::singular;
/// use ast::v1::document::workflow::execution::statement::call;
/// use ast::v1::document::workflow::execution::statement::scatter::Builder;
/// use ast::v1::document::workflow::execution::Statement;
/// use ast::v1::document::Expression;
/// use ast::v1::document::Identifier;
/// use wdl_ast as ast;
///
/// let variable = singular::Identifier::try_from("entity")?;
/// let iterable = Expression::Literal(Literal::Identifier(singular::Identifier::try_from(
/// "entities",
/// )?));
/// let statement = Statement::Call(
/// call::Builder::default()
/// .name(Identifier::from(singular::Identifier::try_from(
/// "hello_world",
/// )?))?
/// .try_build()?,
/// );
///
/// let scatter = Builder::default()
/// .variable(variable)?
/// .iterable(iterable)?
/// .push_workflow_execution_statement(statement.clone())
/// .try_build()?;
///
/// assert_eq!(scatter.statements().unwrap().len(), 1);
/// assert_eq!(
/// scatter
/// .statements()
/// .unwrap()
/// .iter()
/// .next()
/// .unwrap()
/// .as_ref(),
/// &statement
/// );
///
/// # Ok::<(), Box<dyn std::error::Error>>(())
/// ```
pub fn statements(&self) -> Option<&NonEmpty<Box<Statement>>> {
self.statements.as_ref()
}
/// Gets the variable for this [`Scatter`] by reference.
///
/// # Examples
///
/// ```
/// use ast::v1::document::expression::Literal;
/// use ast::v1::document::identifier::singular;
/// use ast::v1::document::workflow::execution::statement::call;
/// use ast::v1::document::workflow::execution::statement::scatter::Builder;
/// use ast::v1::document::workflow::execution::Statement;
/// use ast::v1::document::Expression;
/// use ast::v1::document::Identifier;
/// use wdl_ast as ast;
///
/// let variable = singular::Identifier::try_from("entity")?;
/// let iterable = Expression::Literal(Literal::Identifier(singular::Identifier::try_from(
/// "entities",
/// )?));
/// let statement = Statement::Call(
/// call::Builder::default()
/// .name(Identifier::from(singular::Identifier::try_from(
/// "hello_world",
/// )?))?
/// .try_build()?,
/// );
///
/// let scatter = Builder::default()
/// .variable(variable.clone())?
/// .iterable(iterable)?
/// .push_workflow_execution_statement(statement)
/// .try_build()?;
///
/// assert_eq!(scatter.variable(), &variable);
///
/// # Ok::<(), Box<dyn std::error::Error>>(())
/// ```
pub fn variable(&self) -> &Identifier {
&self.variable
}
}
impl TryFrom<Pair<'_, grammar::v1::Rule>> for Scatter {
type Error = Error;
fn try_from(node: Pair<'_, grammar::v1::Rule>) -> Result<Self, Self::Error> {
check_node!(node, workflow_scatter);
let mut builder = Builder::default();
for node in node.into_inner() {
match node.as_rule() {
Rule::workflow_scatter_iteration_statement => {
// TODO: a clone is required here because Pest's `FlatPairs`
// type does not support creating an iterator without taking
// ownership (at the time of writing). This can be made
// better with a PR to Pest.
let variable_node = dive_one!(
node.clone(),
workflow_scatter_iteration_statement_variable,
workflow_scatter_iteration_statement
);
let variable_node =
unwrap_one!(variable_node, workflow_scatter_iteration_statement_variable);
let variable =
singular::Identifier::try_from(variable_node).map_err(Error::Identifier)?;
let iterable_node = dive_one!(
node.clone(),
workflow_scatter_iteration_statement_iterable,
workflow_scatter_iteration_statement
);
let iterable_node =
unwrap_one!(iterable_node, workflow_scatter_iteration_statement_iterable);
let iterable =
Expression::try_from(iterable_node).map_err(Error::Expression)?;
builder = builder.variable(variable).map_err(Error::Builder)?;
builder = builder.iterable(iterable).map_err(Error::Builder)?;
}
Rule::workflow_execution_statement => {
let statement = Statement::try_from(node).map_err(Error::Statement)?;
builder = builder.push_workflow_execution_statement(statement);
}
Rule::WHITESPACE => {}
Rule::COMMENT => {}
rule => unreachable!("scatter should not contain {:?}", rule),
}
}
builder.try_build().map_err(Error::Builder)
}
}
#[cfg(test)]
mod tests {
use wdl_macros::test::create_invalid_node_test;
use wdl_macros::test::valid_node;
use super::*;
use crate::v1::document::expression::Literal;
use crate::v1::document::workflow::execution::statement::call::body::Value;
#[test]
fn it_parses_from_a_supported_node_type() {
let scatter = valid_node!(
r#"scatter (file in files) {
call read {
input: file, foo=bar
}
call external.write {
input: file, baz=false
}
}"#,
workflow_scatter,
Scatter
);
assert_eq!(scatter.variable().as_str(), "file");
assert_eq!(
scatter.iterable(),
&Expression::Literal(Literal::Identifier(
singular::Identifier::try_from("files").unwrap()
))
);
let statements = scatter.statements().unwrap();
assert_eq!(statements.len(), 2);
let mut statements = statements.into_iter();
let first_call = match statements.next().unwrap().as_ref() {
Statement::Call(call) => call,
_ => unreachable!(),
};
assert_eq!(first_call.name().to_string(), "read");
assert_eq!(
first_call.body().unwrap().get("file"),
Some(&Value::ImplicitBinding)
);
assert_eq!(
first_call.body().unwrap().get("foo"),
Some(&Value::Expression(Expression::Literal(
Literal::Identifier(singular::Identifier::try_from("bar").unwrap())
)))
);
assert_eq!(first_call.body().unwrap().get("does_not_exist"), None);
let second_call = match statements.next().unwrap().as_ref() {
Statement::Call(call) => call,
_ => unreachable!(),
};
assert_eq!(second_call.name().to_string(), "external.write");
assert_eq!(
second_call.body().unwrap().get("file"),
Some(&Value::ImplicitBinding)
);
assert_eq!(
second_call.body().unwrap().get("baz"),
Some(&Value::Expression(Expression::Literal(Literal::Boolean(
false
))))
);
assert_eq!(second_call.body().unwrap().get("does_not_exist"), None);
}
create_invalid_node_test!(
"version 1.1\n\ntask hello { command <<<>>> }",
document,
workflow_scatter,
Scatter,
it_fails_to_parse_from_an_unsupported_node_type
);
}