Crate virust_locator 

This crate provides a set of utilities for generating sequence locators for HIV/SIV sequences resembling the LANL HIV-locator tool.

Modules

config

This module defines the Args struct and related functionality for parsing and validating command-line arguments for the viRust-locator CLI tool. The tool is a simple implementation of LANL’s HIV locator in Rust.

locator

This module defines the Locator struct and related functionality for locating and aligning query sequences against a reference sequence. It provides methods for alignment, pattern matching, and calculating alignment details such as percent identity and indels. The module also includes unit tests for validating the functionality of the Locator struct and its methods.

prelude

reference

Reference sequences for HIV-1 and SIVmm239

Type Aliases

BoxError

! This crate provides a set of utilities for working with the OpenTelemetry ecosystem.