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//! This module contains the implementation of a [wavelet matrix].
//! The wavelet matrix is a data structure that encodes a sequence of `n` `k`-bit words
//! into a matrix of bit vectors, allowing for fast rank and select queries on the encoded sequence.
//!
//! This implementation further supports quantile queries, and range-predecessor and -successor queries.
//! All operations are `O(k)` time complexity.
//!
//! See the struct documentation for more information.
//!
//! [wavelet matrix]: WaveletMatrix
use crate::util::impl_vector_iterator;
use crate::{BitVec, RsVec};
use std::mem;
use std::ops::Range;
/// A wavelet matrix implementation implemented as described in
/// [Navarro and Claude, 2021](http://dx.doi.org/10.1007/978-3-642-34109-0_18).
/// The implementation is designed to allow for extremely large alphabet sizes, without
/// sacrificing performance for small alphabets.
///
/// There are two constructor algorithms available:
/// - [`from_bit_vec`] and [`from_slice`] construct the wavelet matrix by repeatedly sorting the elements.
/// These constructors have linear space overhead and run in `O(kn * log n)` time complexity.
/// - [`from_bit_vec_pc`] and [`from_slice_pc`] construct the wavelet matrix by counting the
/// prefixes of the elements. These constructors have a space complexity of `O(2^k)` and run
/// in `O(kn)`, which makes this constructor preferable for large sequences over small alphabets.
///
/// They encode a sequence of `n` `k`-bit words into a wavelet matrix which supports constant-time
/// rank and select queries on elements of its `k`-bit alphabet.
/// All query functions are mirrored for both `BitVec` and `u64` query elements, so
/// if `k <= 64`, no heap allocation is needed for the query element.
///
/// Other than rank and select queries, the matrix also supports quantile queries (range select i), and
/// range-predecessor and -successor queries, all of which are loosely based on
/// [Külekci and Thankachan](https://doi.org/10.1016/j.jda.2017.01.002) with better time complexity.
///
/// All operations implemented on the matrix are `O(k)` time complexity.
/// The space complexity of the wavelet matrix is `O(n * k)` with a small linear overhead
/// (see [`RsVec`]).
///
/// # Examples
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// // pack elements from a 3-bit alphabet into a bit vector and construct a wavelet matrix from them
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// // query the wavelet matrix
/// assert_eq!(wavelet_matrix.get_u64(0), Some(1));
/// assert_eq!(wavelet_matrix.get_u64(1), Some(4));
///
// // rank and select queries
/// assert_eq!(wavelet_matrix.rank_u64(3, 4), Some(2));
/// assert_eq!(wavelet_matrix.rank_u64(3, 1), Some(1));
/// assert_eq!(wavelet_matrix.select_u64(0, 7), Some(5));
///
/// // statistics
/// assert_eq!(wavelet_matrix.range_median_u64(0..3), Some(4));
/// assert_eq!(wavelet_matrix.predecessor_u64(0..6, 3), Some(2));
/// ```
///
/// [`RsVec`]: RsVec
#[derive(Clone, Debug)]
pub struct WaveletMatrix {
data: Box<[RsVec]>,
bits_per_element: u16,
}
impl WaveletMatrix {
/// Generic constructor that constructs the wavelet matrix by repeatedly sorting the elements.
/// The runtime complexity is `O(kn * log n)`.
///
/// # Parameters
/// - `bits_per_element`: The number of bits in each word. Cannot exceed 1 << 16.
/// - `num_elements`: The number of elements in the sequence.
/// - `bit_lookup`: A closure that returns the `bit`-th bit of the `element`-th word.
#[inline(always)] // should get rid of closures in favor of static calls
fn permutation_sorting<LOOKUP: Fn(usize, usize) -> u64>(
bits_per_element: u16,
num_elements: usize,
bit_lookup: LOOKUP,
) -> Self {
let element_len = bits_per_element as usize;
let mut data = vec![BitVec::from_zeros(num_elements); element_len];
// insert the first bit of each word into the first bit vector
// for each following level, insert the next bit of each word into the next bit vector
// sorted stably by the previous bit vector
let mut permutation = (0..num_elements).collect::<Vec<_>>();
let mut next_permutation = vec![0; num_elements];
for (level, data) in data.iter_mut().enumerate() {
let mut total_zeros = 0;
for i in 0..num_elements {
if bit_lookup(permutation[i], element_len - level - 1) == 0 {
total_zeros += 1;
} else {
data.set(i, 1).unwrap();
}
}
// scan through the generated bit array and move the elements to the correct position
// for the next permutation
if level < element_len - 1 {
let mut zero_boundary = 0;
let mut one_boundary = total_zeros;
for i in 0..num_elements {
if data.get_unchecked(i) == 0 {
next_permutation[zero_boundary] = permutation[i];
zero_boundary += 1;
} else {
next_permutation[one_boundary] = permutation[i];
one_boundary += 1;
}
}
mem::swap(&mut permutation, &mut next_permutation);
}
}
Self {
data: data.into_iter().map(BitVec::into).collect(),
bits_per_element,
}
}
/// Create a new wavelet matrix from a sequence of `n` `k`-bit words.
/// The constructor runs in `O(kn * log n)` time complexity.
///
/// # Parameters
/// - `bit_vec`: A packed sequence of `n` `k`-bit words. The `i`-th word begins in the
/// `bits_per_element * i`-th bit of the bit vector. Words are stored from least to most
/// significant bit.
/// - `bits_per_element`: The number `k` of bits in each word. Cannot exceed 1 << 16.
///
/// # Panics
/// Panics if the number of bits in the bit vector is not a multiple of the number of bits per element.
#[must_use]
pub fn from_bit_vec(bit_vec: &BitVec, bits_per_element: u16) -> Self {
assert_eq!(bit_vec.len() % bits_per_element as usize, 0, "The number of bits in the bit vector must be a multiple of the number of bits per element.");
let num_elements = bit_vec.len() / bits_per_element as usize;
Self::permutation_sorting(bits_per_element, num_elements, |element, bit| {
bit_vec.get_unchecked(element * bits_per_element as usize + bit)
})
}
/// Create a new wavelet matrix from a sequence of `n` `k`-bit words.
/// The constructor runs in `O(kn * log n)` time complexity.
///
/// # Parameters
/// - `sequence`: A slice of `n` u64 values, each encoding a `k`-bit word.
/// - `bits_per_element`: The number `k` of bits in each word. Cannot exceed 64.
///
/// # Panics
/// Panics if the number of bits per element exceeds 64.
#[must_use]
pub fn from_slice(sequence: &[u64], bits_per_element: u16) -> Self {
assert!(
bits_per_element <= 64,
"The number of bits per element cannot exceed 64."
);
Self::permutation_sorting(bits_per_element, sequence.len(), |element, bit| {
(sequence[element] >> bit) & 1
})
}
/// Generic constructor that constructs the wavelet matrix by counting the prefixes of the elements.
/// The runtime complexity is `O(kn)`.
/// This constructor is only recommended for small alphabets.
///
/// # Parameters
/// - `bits_per_element`: The number of bits in each word. Cannot exceed 64.
/// - `num_elements`: The number of elements in the sequence.
/// - `bit_lookup`: A closure that returns the `bit`-th bit of the `element`-th word.
/// - `element_lookup`: A closure that returns the `element`-th word.
#[inline(always)] // should get rid of closures in favor of static calls
fn prefix_counting<LOOKUP: Fn(usize, usize) -> u64, ELEMENT: Fn(usize) -> u64>(
bits_per_element: u16,
num_elements: usize,
bit_lookup: LOOKUP,
element_lookup: ELEMENT,
) -> Self {
let element_len = bits_per_element as usize;
let mut histogram = vec![0usize; 1 << bits_per_element];
let mut borders = vec![0usize; 1 << bits_per_element];
let mut data = vec![BitVec::from_zeros(num_elements); element_len];
for i in 0..num_elements {
histogram[element_lookup(i) as usize] += 1;
data[0].set_unchecked(i, bit_lookup(i, element_len - 1));
}
for level in (1..element_len).rev() {
// combine histograms of prefixes
for h in 0..1 << level {
histogram[h] = histogram[2 * h] + histogram[2 * h + 1];
}
// compute borders of current level, using bit reverse patterns because of the weird
// node ordering in wavelet matrices
borders[0] = 0;
for h in 1usize..1 << level {
let h_minus_1 = (h - 1).reverse_bits() >> (64 - level);
borders[h.reverse_bits() >> (64 - level)] =
borders[h_minus_1] + histogram[h_minus_1];
}
for i in 0..num_elements {
let bit = bit_lookup(i, element_len - level - 1);
data[level].set_unchecked(
borders[element_lookup(i) as usize >> (element_len - level)],
bit,
);
borders[element_lookup(i) as usize >> (element_len - level)] += 1;
}
}
Self {
data: data.into_iter().map(BitVec::into).collect(),
bits_per_element,
}
}
/// Create a new wavelet matrix from a sequence of `n` `k`-bit words using the prefix counting
/// algorithm [Dinklage et al.](https://doi.org/10.1145/3457197)
/// The constructor runs in `O(kn)` time complexity but requires `O(2^k)` space during construction,
/// so it is only recommended for small alphabets.
/// Use the [`from_bit_vec`] or [`from_slice`] constructors for larger alphabets.
///
/// # Parameters
/// - `bit_vec`: A packed sequence of `n` `k`-bit words. The `i`-th word begins in the
/// `bits_per_element * i`-th bit of the bit vector. Words are stored from least to most
/// significant bit.
/// - `bits_per_element`: The number `k` of bits in each word. Cannot exceed 1 << 16.
///
/// # Panics
/// Panics if the number of bits in the bit vector is not a multiple of the number of bits per element,
/// or if the number of bits per element exceeds 64.
///
/// [`from_bit_vec`]: WaveletMatrix::from_bit_vec
/// [`from_slice`]: WaveletMatrix::from_slice
#[must_use]
pub fn from_bit_vec_pc(bit_vec: &BitVec, bits_per_element: u16) -> Self {
assert_eq!(bit_vec.len() % bits_per_element as usize, 0, "The number of bits in the bit vector must be a multiple of the number of bits per element.");
assert!(
bits_per_element <= 64,
"The number of bits per element cannot exceed 64."
);
let num_elements = bit_vec.len() / bits_per_element as usize;
Self::prefix_counting(
bits_per_element,
num_elements,
|element, bit| bit_vec.get_unchecked(element * bits_per_element as usize + bit),
|element| {
bit_vec.get_bits_unchecked(
element * bits_per_element as usize,
bits_per_element as usize,
)
},
)
}
/// Create a new wavelet matrix from a sequence of `n` `k`-bit words using the prefix counting
/// algorithm [Dinklage et al.](https://doi.org/10.1145/3457197)
/// The constructor runs in `O(kn)` time complexity but requires `O(2^k)` space during construction,
/// so it is only recommended for small alphabets.
/// Use the [`from_bit_vec`] or [`from_slice`] constructors for larger alphabets.
///
/// # Parameters
/// - `sequence`: A slice of `n` u64 values, each encoding a `k`-bit word.
/// - `bits_per_element`: The number `k` of bits in each word. Cannot exceed 64.
///
/// # Panics
/// Panics if the number of bits per element exceeds 64.
///
/// [`from_bit_vec`]: WaveletMatrix::from_bit_vec
/// [`from_slice`]: WaveletMatrix::from_slice
#[must_use]
pub fn from_slice_pc(sequence: &[u64], bits_per_element: u16) -> Self {
assert!(
bits_per_element <= 64,
"The number of bits per element cannot exceed 64."
);
Self::prefix_counting(
bits_per_element,
sequence.len(),
|element, bit| (sequence[element] >> bit) & 1,
|element| sequence[element],
)
}
/// Generic function to read a value from the wavelet matrix and consume it with a closure.
/// The function is used by the `get_value` and `get_u64` functions, deduplicating code.
#[inline(always)]
fn reconstruct_value_unchecked<F: FnMut(u64)>(&self, mut i: usize, mut target_func: F) {
for level in 0..self.bits_per_element as usize {
let bit = self.data[level].get_unchecked(i);
target_func(bit);
if bit == 0 {
i = self.data[level].rank0(i);
} else {
i = self.data[level].rank0 + self.data[level].rank1(i);
}
}
}
/// Get the `i`-th element of the encoded sequence in a `k`-bit word.
/// The `k`-bit word is returned as a `BitVec`.
/// The first element of the bit vector is the least significant bit.
///
/// Returns `None` if the index is out of bounds.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.get_value(0), Some(BitVec::pack_sequence_u8(&[1], 3)));
/// assert_eq!(wavelet_matrix.get_value(1), Some(BitVec::pack_sequence_u8(&[4], 3)));
/// assert_eq!(wavelet_matrix.get_value(100), None);
/// ```
#[must_use]
pub fn get_value(&self, i: usize) -> Option<BitVec> {
if self.data.is_empty() || i >= self.data[0].len() {
None
} else {
Some(self.get_value_unchecked(i))
}
}
/// Get the `i`-th element of the encoded sequence in a `k`-bit word.
/// The `k`-bit word is returned as a `BitVec`.
/// The first element of the bit vector is the least significant bit.
/// This function does not perform bounds checking.
/// Use [`get_value`] for a checked version.
///
/// # Panics
/// May panic if the index is out of bounds. May instead return an empty bit vector.
///
/// [`get_value`]: WaveletMatrix::get_value
#[must_use]
pub fn get_value_unchecked(&self, i: usize) -> BitVec {
let mut value = BitVec::from_zeros(self.bits_per_element as usize);
let mut level = self.bits_per_element - 1;
self.reconstruct_value_unchecked(i, |bit| {
value.set_unchecked(level as usize, bit);
level = level.saturating_sub(1);
});
value
}
/// Get the `i`-th element of the encoded sequence as a `u64`.
/// The `u64` is constructed from the `k`-bit word stored in the wavelet matrix.
///
/// Returns `None` if the index is out of bounds, or if the number of bits per element exceeds 64.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.get_u64(0), Some(1));
/// assert_eq!(wavelet_matrix.get_u64(1), Some(4));
/// assert_eq!(wavelet_matrix.get_u64(100), None);
/// ```
#[must_use]
pub fn get_u64(&self, i: usize) -> Option<u64> {
if self.bits_per_element > 64 || self.data.is_empty() || i >= self.data[0].len() {
None
} else {
Some(self.get_u64_unchecked(i))
}
}
/// Get the `i`-th element of the encoded sequence as a `u64` numeral.
/// The element is encoded in the lowest `k` bits of the numeral.
/// If the number of bits per element exceeds 64, the value is truncated.
/// This function does not perform bounds checking.
/// Use [`get_u64`] for a checked version.
///
/// # Panic
/// May panic if the value of `i` is out of bounds. May instead return 0.
///
/// [`get_u64`]: WaveletMatrix::get_u64
#[must_use]
pub fn get_u64_unchecked(&self, i: usize) -> u64 {
let mut value = 0;
self.reconstruct_value_unchecked(i, |bit| {
value <<= 1;
value |= bit;
});
value
}
/// Get the number of occurrences of the given `symbol` in the encoded sequence in the `range`.
/// The `symbol` is a `k`-bit word encoded in a [`BitVec`],
/// where the least significant bit is the first element, and `k` is the number of bits per element
/// in the wavelet matrix.
///
/// This method does not perform bounds checking, nor does it check if the `symbol` is a valid
/// `k`-bit word.
/// Use [`rank_range`] for a checked version.
///
/// # Panics
/// May panic if the `range` is out of bounds,
/// or if the number of bits in `symbol` is lower than `k`.
/// May instead return 0.
///
/// [`BitVec`]: BitVec
/// [`rank_range`]: WaveletMatrix::rank_range
#[must_use]
pub fn rank_range_unchecked(&self, mut range: Range<usize>, symbol: &BitVec) -> usize {
for (level, data) in self.data.iter().enumerate() {
if symbol.get_unchecked((self.bits_per_element - 1) as usize - level) == 0 {
range.start = data.rank0(range.start);
range.end = data.rank0(range.end);
} else {
range.start = data.rank0 + data.rank1(range.start);
range.end = data.rank0 + data.rank1(range.end);
}
}
range.end - range.start
}
/// Get the number of occurrences of the given `symbol` in the encoded sequence in the `range`.
/// The `symbol` is a `k`-bit word encoded in a [`BitVec`],
/// where the least significant bit is the first element, and `k` is the number of bits per element
/// in the wavelet matrix.
///
/// Returns `None` if the `range` is out of bounds (greater than the length of the encoded sequence,
/// but since it is exclusive, it may be equal to the length),
/// or if the number of bits in `symbol` is not equal to `k`.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.rank_range(0..3, &BitVec::pack_sequence_u8(&[4], 3)), Some(2));
/// assert_eq!(wavelet_matrix.rank_range(2..4, &BitVec::pack_sequence_u8(&[4], 3)), Some(1));
/// ```
///
/// [`BitVec`]: BitVec
#[must_use]
pub fn rank_range(&self, range: Range<usize>, symbol: &BitVec) -> Option<usize> {
if range.start >= self.len()
|| range.end > self.len()
|| symbol.len() != self.bits_per_element as usize
{
None
} else {
Some(self.rank_range_unchecked(range, symbol))
}
}
/// Get the number of occurrences of the given `symbol` in the encoded sequence in the `range`.
/// The `symbol` is a `k`-bit word encoded in a u64 numeral,
/// where k is less than or equal to 64.
/// The interval is half-open, meaning `rank_range_u64(0..0, symbol)` returns 0.
///
/// This method does not perform bounds checking, nor does it check if the elements of the
/// wavelet matrix can be represented in a u64 numeral.
/// Use [`rank_range_u64`] for a checked version.
///
/// # Panics
/// May panic if the `range` is out of bounds.
/// May instead return 0.
/// If the number of bits in wavelet matrix elements exceed `64`, the behavior is
/// platform-dependent.
///
/// [`rank_range_u64`]: WaveletMatrix::rank_range_u64
#[must_use]
pub fn rank_range_u64_unchecked(&self, mut range: Range<usize>, symbol: u64) -> usize {
for (level, data) in self.data.iter().enumerate() {
if (symbol >> ((self.bits_per_element - 1) as usize - level)) & 1 == 0 {
range.start = data.rank0(range.start);
range.end = data.rank0(range.end);
} else {
range.start = data.rank0 + data.rank1(range.start);
range.end = data.rank0 + data.rank1(range.end);
}
}
range.end - range.start
}
/// Get the number of occurrences of the given `symbol` in the encoded sequence in the `range`.
/// The `symbol` is a `k`-bit word encoded in a u64 numeral,
/// where k is less than or equal to 64.
/// The interval is half-open, meaning `rank_range_u64(0..0, symbol)` returns 0.
///
/// Returns `None` if the `range` is out of bounds (greater than the length of the encoded sequence,
/// but since it is exclusive, it may be equal to the length),
/// or if the number of bits in the wavelet matrix elements exceed `64`.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.rank_range_u64(0..3, 4), Some(2));
/// assert_eq!(wavelet_matrix.rank_range_u64(2..4, 4), Some(1));
/// ```
#[must_use]
pub fn rank_range_u64(&self, range: Range<usize>, symbol: u64) -> Option<usize> {
if range.start >= self.len() || range.end > self.len() || self.bits_per_element > 64 {
None
} else {
Some(self.rank_range_u64_unchecked(range, symbol))
}
}
/// Get the number of occurrences of the given `symbol` in the encoded sequence between the
/// `offset`-th and `i`-th element (exclusive).
/// This is equivalent to ```rank_range_unchecked(offset..i, symbol)```.
/// The interval is half-open, meaning ```rank_offset_unchecked(0, 0, symbol)``` returns 0.
///
/// The `symbol` is a `k`-bit word encoded in a [`BitVec`],
/// where the least significant bit is the first element, and `k` is the number of bits per element
/// in the wavelet matrix.
///
/// This method does not perform bounds checking, nor does it check if the `symbol` is a valid
/// `k`-bit word.
/// Use [`rank_offset`] for a checked version.
///
/// # Panics
/// May panic if `offset` is out of bounds,
/// or if `offset + i` is larger than the length of the encoded sequence,
/// or if `offset` is greater than `i`,
/// or if the number of bits in `symbol` is lower than `k`.
/// May instead return 0.
///
/// [`BitVec`]: BitVec
/// [`rank_offset`]: WaveletMatrix::rank_offset
#[must_use]
pub fn rank_offset_unchecked(&self, offset: usize, i: usize, symbol: &BitVec) -> usize {
self.rank_range_unchecked(offset..i, symbol)
}
/// Get the number of occurrences of the given `symbol` in the encoded sequence between the
/// `offset`-th and `i`-th element (exclusive).
/// This is equivalent to ``rank_range(offset..i, symbol)``.
/// The interval is half-open, meaning ``rank_offset(0, 0, symbol)`` returns 0,
/// because the interval is empty.
///
/// The `symbol` is a `k`-bit word encoded in a [`BitVec`],
/// where the least significant bit is the first element, and `k` is the number of bits per element
/// in the wavelet matrix.
///
/// Returns `None` if `offset` is out of bounds,
/// or if `i` is larger than the length of the encoded sequence,
/// or if `offset` is greater than `i`,
/// or if the number of bits in `symbol` is not equal to `k`.
/// `i` may equal the length of the encoded sequence,
/// which will return the number of occurrences of the symbol up to the end of the sequence.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.rank_offset(0, 3, &BitVec::pack_sequence_u8(&[4], 3)), Some(2));
/// assert_eq!(wavelet_matrix.rank_offset(2, 4, &BitVec::pack_sequence_u8(&[4], 3)), Some(1));
/// ```
///
/// [`BitVec`]: BitVec
#[must_use]
pub fn rank_offset(&self, offset: usize, i: usize, symbol: &BitVec) -> Option<usize> {
if offset > i
|| offset >= self.len()
|| i > self.len()
|| symbol.len() != self.bits_per_element as usize
{
None
} else {
Some(self.rank_offset_unchecked(offset, i, symbol))
}
}
/// Get the number of occurrences of the given `symbol` in the encoded sequence between the
/// `offset`-th and `i`-th element (exclusive).
/// This is equivalent to ``rank_range(offset..i, symbol)``.
/// The interval is half-open, meaning ``rank_offset(0, 0, symbol)`` returns 0.
///
/// The `symbol` is a `k`-bit word encoded in a u64 numeral,
/// where k is less than or equal to 64.
///
/// This method does not perform bounds checking, nor does it check if the elements of the
/// wavelet matrix can be represented in a u64 numeral.
/// Use [`rank_offset_u64`] for a checked version.
///
/// # Panics
/// May panic if `offset` is out of bounds,
/// or if `i` is larger than the length of the encoded sequence,
/// or if `offset` is greater than `i`,
/// or if the number of bits in wavelet matrix elements exceed `64`.
/// May instead return 0.
///
/// [`rank_offset_u64`]: WaveletMatrix::rank_offset_u64
#[must_use]
pub fn rank_offset_u64_unchecked(&self, offset: usize, i: usize, symbol: u64) -> usize {
self.rank_range_u64_unchecked(offset..i, symbol)
}
/// Get the number of occurrences of the given `symbol` in the encoded sequence between the
/// `offset`-th and `i`-th element (exclusive).
/// This is equivalent to ``rank_range(offset..i, symbol)``.
/// The interval is half-open, meaning ``rank_offset(0, 0, symbol)`` returns 0.
///
/// The `symbol` is a `k`-bit word encoded in a u64 numeral,
/// where k is less than or equal to 64.
///
/// Returns `None` if `offset` is out of bounds,
/// or if `i` is larger than the length of the encoded sequence,
/// or if `offset` is greater than `i`,
/// or if the number of bits in the wavelet matrix elements exceed `64`.
/// `i` may equal the length of the encoded sequence,
/// which will return the number of occurrences of the symbol up to the end of the sequence.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.rank_offset_u64(0, 3, 4), Some(2));
/// assert_eq!(wavelet_matrix.rank_offset_u64(2, 4, 4), Some(1));
/// ```
#[must_use]
pub fn rank_offset_u64(&self, offset: usize, i: usize, symbol: u64) -> Option<usize> {
if offset > i || offset >= self.len() || i > self.len() || self.bits_per_element > 64 {
None
} else {
Some(self.rank_offset_u64_unchecked(offset, i, symbol))
}
}
/// Get the number of occurrences of the given `symbol` in the encoded sequence up to the `i`-th
/// element (exclusive).
/// The `symbol` is a `k`-bit word encoded in a [`BitVec`],
/// where the least significant bit is the first element, and `k` is the number of bits per element
/// in the wavelet matrix.
///
/// This method does not perform bounds checking, nor does it check if the `symbol` is a valid
/// `k`-bit word.
/// Use [`rank`] for a checked version.
///
/// # Panics
/// May panic if `i` is out of bounds, or if the number of bits in `symbol` is lower than `k`.
/// May instead return 0.
/// If the number of bits in `symbol` exceeds `k`, the remaining bits are ignored.
///
/// [`BitVec`]: BitVec
/// [`rank`]: WaveletMatrix::rank
#[must_use]
pub fn rank_unchecked(&self, i: usize, symbol: &BitVec) -> usize {
self.rank_range_unchecked(0..i, symbol)
}
/// Get the number of occurrences of the given `symbol` in the encoded sequence up to the `i`-th
/// element (exclusive).
/// The `symbol` is a `k`-bit word encoded in a [`BitVec`],
/// where the least significant bit is the first element, and `k` is the number of bits per element
/// in the wavelet matrix.
///
/// Returns `None` if `i` is out of bounds (greater than the length of the encoded sequence, but
/// since it is exclusive, it may be equal to the length),
/// or if the number of bits in `symbol` is not equal to `k`.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.rank(3, &BitVec::pack_sequence_u8(&[4], 3)), Some(2));
/// assert_eq!(wavelet_matrix.rank(3, &BitVec::pack_sequence_u8(&[1], 3)), Some(1));
/// ```
///
/// [`BitVec`]: BitVec
#[must_use]
pub fn rank(&self, i: usize, symbol: &BitVec) -> Option<usize> {
if i > self.len() || symbol.len() != self.bits_per_element as usize {
None
} else {
Some(self.rank_range_unchecked(0..i, symbol))
}
}
/// Get the number of occurrences of the given `symbol` in the encoded sequence up to the `i`-th
/// element (exclusive).
/// The `symbol` is a `k`-bit word encoded in a u64 numeral,
/// where k is less than or equal to 64.
///
/// This method does not perform bounds checking, nor does it check if the elements of the
/// wavelet matrix can be represented in a u64 numeral.
/// Use [`rank_u64`] for a checked version.
///
/// # Panics
/// May panic if `i` is out of bounds,
/// or if the number of bits in wavelet matrix elements exceed `64`.
/// May instead return 0.
///
/// [`rank_u64`]: WaveletMatrix::rank_u64
#[must_use]
pub fn rank_u64_unchecked(&self, i: usize, symbol: u64) -> usize {
self.rank_range_u64_unchecked(0..i, symbol)
}
/// Get the number of occurrences of the given `symbol` in the encoded sequence up to the `i`-th
/// element (exclusive).
/// The `symbol` is a `k`-bit word encoded in a u64 numeral,
/// where k is less than or equal to 64.
///
/// Returns `None` if `i` is out of bounds (greater than the length of the encoded sequence, but
/// since it is exclusive, it may be equal to the length),
/// or if the number of bits in the wavelet matrix elements exceed `64`.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.rank_u64(3, 4), Some(2));
/// assert_eq!(wavelet_matrix.rank_u64(3, 1), Some(1));
/// ```
#[must_use]
pub fn rank_u64(&self, i: usize, symbol: u64) -> Option<usize> {
if i > self.len() || self.bits_per_element > 64 {
None
} else {
Some(self.rank_range_u64_unchecked(0..i, symbol))
}
}
/// Get the index of the `rank`-th occurrence of the given `symbol` in the encoded sequence,
/// starting from the `offset`-th element.
/// The `symbol` is a `k`-bit word encoded in a [`BitVec`],
/// where the least significant bit is the first element, and `k` is the number of bits per element
/// in the wavelet matrix.
///
/// This method does not perform bounds checking, nor does it check if the `symbol` is a valid
/// `k`-bit word.
/// Use [`select_offset`] for a checked version.
///
/// Returns the index of the `rank`-th occurrence of the `symbol` in the encoded sequence,
/// or the length of the encoded sequence if the `rank`-th occurrence does not exist.
///
/// # Panics
/// May panic if the `offset` is out of bounds,
/// or if the number of bits in `symbol` is lower than `k`.
/// May instead return the length of the encoded sequence.
///
/// [`BitVec`]: BitVec
/// [`select_offset`]: WaveletMatrix::select_offset
#[must_use]
pub fn select_offset_unchecked(&self, offset: usize, rank: usize, symbol: &BitVec) -> usize {
let mut range_start = offset;
for (level, data) in self.data.iter().enumerate() {
if symbol.get_unchecked((self.bits_per_element - 1) as usize - level) == 0 {
range_start = data.rank0(range_start);
} else {
range_start = data.rank0 + data.rank1(range_start);
}
}
let mut range_end = range_start + rank;
for (level, data) in self.data.iter().enumerate().rev() {
if symbol.get_unchecked((self.bits_per_element - 1) as usize - level) == 0 {
range_end = data.select0(range_end);
} else {
range_end = data.select1(range_end - data.rank0);
}
}
range_end
}
/// Get the index of the `rank`-th occurrence of the given `symbol` in the encoded sequence,
/// starting from the `offset`-th element.
/// The `symbol` is a `k`-bit word encoded in a [`BitVec`],
/// where the least significant bit is the first element, and `k` is the number of bits per element
/// in the wavelet matrix.
///
/// Returns `None` if `offset` is out of bounds, or if the number of bits in `symbol` is not equal to `k`,
/// or if the `rank`-th occurrence of the `symbol` does not exist.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.select_offset(0, 0, &BitVec::pack_sequence_u8(&[4], 3)), Some(1));
/// assert_eq!(wavelet_matrix.select_offset(0, 1, &BitVec::pack_sequence_u8(&[4], 3)), Some(2));
/// assert_eq!(wavelet_matrix.select_offset(2, 0, &BitVec::pack_sequence_u8(&[4], 3)), Some(2));
/// assert_eq!(wavelet_matrix.select_offset(2, 1, &BitVec::pack_sequence_u8(&[4], 3)), None);
/// ```
///
/// [`BitVec`]: BitVec
#[must_use]
pub fn select_offset(&self, offset: usize, rank: usize, symbol: &BitVec) -> Option<usize> {
if offset >= self.len() || symbol.len() != self.bits_per_element as usize {
None
} else {
let idx = self.select_offset_unchecked(offset, rank, symbol);
if idx < self.len() {
Some(idx)
} else {
None
}
}
}
/// Get the index of the `rank`-th occurrence of the given `symbol` in the encoded sequence,
/// starting from the `offset`-th element.
/// The `symbol` is a `k`-bit word encoded in a u64 numeral,
/// where k is less than or equal to 64.
///
/// This method does not perform bounds checking, nor does it check if the elements of the
/// wavelet matrix can be represented in a u64 numeral.
/// Use [`select_offset_u64`] for a checked version.
///
/// Returns the index of the `rank`-th occurrence of the `symbol` in the encoded sequence,
/// or the length of the encoded sequence if the `rank`-th occurrence does not exist.
///
/// # Panics
/// May panic if the `offset` is out of bounds,
/// or if the number of bits in wavelet matrix elements exceed `64`.
/// May instead return the length of the encoded sequence.
///
/// [`select_offset_u64`]: WaveletMatrix::select_offset_u64
#[must_use]
pub fn select_offset_u64_unchecked(&self, offset: usize, rank: usize, symbol: u64) -> usize {
let mut range_start = offset;
for (level, data) in self.data.iter().enumerate() {
if (symbol >> ((self.bits_per_element - 1) as usize - level)) & 1 == 0 {
range_start = data.rank0(range_start);
} else {
range_start = data.rank0 + data.rank1(range_start);
}
}
let mut range_end = range_start + rank;
for (level, data) in self.data.iter().enumerate().rev() {
if (symbol >> ((self.bits_per_element - 1) as usize - level)) & 1 == 0 {
range_end = data.select0(range_end);
} else {
range_end = data.select1(range_end - data.rank0);
}
}
range_end
}
/// Get the index of the `rank`-th occurrence of the given `symbol` in the encoded sequence,
/// starting from the `offset`-th element.
/// The `symbol` is a `k`-bit word encoded in a u64 numeral,
/// where k is less than or equal to 64.
///
/// Returns `None` if `offset` is out of bounds, or if the number of bits in the wavelet matrix
/// elements exceed `64`, or if the `rank`-th occurrence of the `symbol` does not exist.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.select_offset_u64(0, 0, 4), Some(1));
/// assert_eq!(wavelet_matrix.select_offset_u64(0, 1, 4), Some(2));
/// assert_eq!(wavelet_matrix.select_offset_u64(2, 0, 4), Some(2));
/// assert_eq!(wavelet_matrix.select_offset_u64(2, 1, 4), None);
/// ```
#[must_use]
pub fn select_offset_u64(&self, offset: usize, rank: usize, symbol: u64) -> Option<usize> {
if offset >= self.len() || self.bits_per_element > 64 {
None
} else {
let idx = self.select_offset_u64_unchecked(offset, rank, symbol);
if idx < self.len() {
Some(idx)
} else {
None
}
}
}
/// Get the index of the `rank`-th occurrence of the given `symbol` in the encoded sequence.
/// The `symbol` is a `k`-bit word encoded in a [`BitVec`],
/// where the least significant bit is the first element, and `k` is the number of bits per element
/// in the wavelet matrix.
///
/// This method does not perform bounds checking, nor does it check if the `symbol` is a valid
/// `k`-bit word.
/// Use [`select`] for a checked version.
///
/// Returns the index of the `rank`-th occurrence of the `symbol` in the encoded sequence,
/// or the length of the encoded sequence if the `rank`-th occurrence does not exist.
///
/// # Panics
/// May panic if the number of bits in `symbol` is not equal to `k`.
/// May instead return the length of the encoded sequence.
///
/// [`BitVec`]: BitVec
/// [`select`]: WaveletMatrix::select
#[must_use]
pub fn select_unchecked(&self, rank: usize, symbol: &BitVec) -> usize {
self.select_offset_unchecked(0, rank, symbol)
}
/// Get the index of the `rank`-th occurrence of the given `symbol` in the encoded sequence.
/// The `symbol` is a `k`-bit word encoded in a [`BitVec`],
/// where the least significant bit is the first element, and `k` is the number of bits per element
/// in the wavelet matrix.
///
/// Returns `None` if the number of bits in `symbol` is not equal to `k`,
/// or if the `rank`-th occurrence of the `symbol` does not exist.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.select(0, &BitVec::pack_sequence_u8(&[4], 3)), Some(1));
/// assert_eq!(wavelet_matrix.select(1, &BitVec::pack_sequence_u8(&[4], 3)), Some(2));
/// ```
///
/// [`BitVec`]: BitVec
#[must_use]
pub fn select(&self, rank: usize, symbol: &BitVec) -> Option<usize> {
if symbol.len() == self.bits_per_element as usize {
let idx = self.select_unchecked(rank, symbol);
if idx < self.len() {
Some(idx)
} else {
None
}
} else {
None
}
}
/// Get the index of the `rank`-th occurrence of the given `symbol` in the encoded sequence.
/// The `symbol` is a `k`-bit word encoded in a u64 numeral,
/// where k is less than or equal to 64.
///
/// This method does not perform bounds checking, nor does it check if the elements of the
/// wavelet matrix can be represented in a u64 numeral.
/// Use [`select_u64`] for a checked version.
///
/// Returns the index of the `rank`-th occurrence of the `symbol` in the encoded sequence,
/// or the length of the encoded sequence if the `rank`-th occurrence does not exist.
///
/// # Panics
/// May panic if the number of bits in wavelet matrix elements exceed `64`.
/// May instead return the length of the encoded sequence.
///
/// [`select_u64`]: WaveletMatrix::select_u64
#[must_use]
pub fn select_u64_unchecked(&self, rank: usize, symbol: u64) -> usize {
self.select_offset_u64_unchecked(0, rank, symbol)
}
/// Get the index of the `rank`-th occurrence of the given `symbol` in the encoded sequence.
/// The `symbol` is a `k`-bit word encoded in a u64 numeral,
/// where k is less than or equal to 64.
///
/// Returns `None` if the number of bits in the wavelet matrix elements exceed `64`,
/// or if the `rank`-th occurrence of the `symbol` does not exist.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.select_u64(0, 4), Some(1));
/// assert_eq!(wavelet_matrix.select_u64(1, 4), Some(2));
/// ```
#[must_use]
pub fn select_u64(&self, rank: usize, symbol: u64) -> Option<usize> {
if self.bits_per_element > 64 {
None
} else {
let idx = self.select_u64_unchecked(rank, symbol);
if idx < self.len() {
Some(idx)
} else {
None
}
}
}
/// Get the `k`-th smallest element in the encoded sequence in the specified `range`,
/// where `k = 0` returns the smallest element.
/// The `range` is a half-open interval, meaning that the `end` index is exclusive.
/// The `k`-th smallest element is returned as a `BitVec`,
/// where the least significant bit is the first element.
///
/// This method does not perform bounds checking.
/// It returns a nonsensical result if the `k` is greater than the size of the range.
/// Use [`quantile`] for a checked version.
///
/// # Panics
/// May panic if the `range` is out of bounds. May instead return an empty bit vector.
///
/// [`quantile`]: WaveletMatrix::quantile
#[must_use]
pub fn quantile_unchecked(&self, range: Range<usize>, k: usize) -> BitVec {
let result = BitVec::from_zeros(self.bits_per_element as usize);
self.partial_quantile_search_unchecked(range, k, 0, result)
}
/// Internal function to reuse the quantile code for the predecessor and successor search.
/// This function performs the quantile search starting at the given level with the given prefix.
///
/// The function does not perform any checks, so the caller must ensure that the range is valid,
/// and that the prefix is a valid prefix for the given level.
#[inline(always)]
fn partial_quantile_search_unchecked(
&self,
mut range: Range<usize>,
mut k: usize,
start_level: usize,
mut prefix: BitVec,
) -> BitVec {
debug_assert!(prefix.len() == self.bits_per_element as usize);
debug_assert!(!range.is_empty());
debug_assert!(range.end <= self.len());
for (level, data) in self.data.iter().enumerate().skip(start_level) {
let zeros_start = data.rank0(range.start);
let zeros_end = data.rank0(range.end);
let zeros = zeros_end - zeros_start;
// if k < zeros, the element is among the zeros
if k < zeros {
range.start = zeros_start;
range.end = zeros_end;
} else {
// the element is among the ones, so we set the bit to 1, and move the range
// into the 1-partition of the next level
prefix.set_unchecked((self.bits_per_element - 1) as usize - level, 1);
k -= zeros;
range.start = data.rank0 + (range.start - zeros_start); // range.start - zeros_start is the rank1 of range.start
range.end = data.rank0 + (range.end - zeros_end); // same here
}
}
prefix
}
/// Get the `k`-th smallest element in the encoded sequence in the specified `range`,
/// where `k = 0` returns the smallest element.
/// The `range` is a half-open interval, meaning that the `end` index is exclusive.
/// The `k`-th smallest element is returned as a `BitVec`,
/// where the least significant bit is the first element.
///
/// Returns `None` if the `range` is out of bounds, or if `k` is greater than the size of the range.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.quantile(0..3, 0), Some(BitVec::pack_sequence_u8(&[1], 3)));
/// assert_eq!(wavelet_matrix.quantile(0..3, 1), Some(BitVec::pack_sequence_u8(&[4], 3)));
/// assert_eq!(wavelet_matrix.quantile(1..4, 0), Some(BitVec::pack_sequence_u8(&[1], 3)));
/// ```
#[must_use]
pub fn quantile(&self, range: Range<usize>, k: usize) -> Option<BitVec> {
if range.start >= self.len() || range.end > self.len() || k >= range.end - range.start {
None
} else {
Some(self.quantile_unchecked(range, k))
}
}
/// Get the `i`-th smallest element in the entire wavelet matrix.
/// The `i`-th smallest element is returned as a `BitVec`,
/// where the least significant bit is the first element.
///
/// This method does not perform bounds checking.
/// Use [`get_sorted`] for a checked version.
///
/// # Panics
/// May panic if the `i` is out of bounds, or returns an empty bit vector.
#[must_use]
pub fn get_sorted_unchecked(&self, i: usize) -> BitVec {
self.quantile_unchecked(0..self.len(), i)
}
/// Get the `i`-th smallest element in the wavelet matrix.
/// The `i`-th smallest element is returned as a `BitVec`,
/// where the least significant bit is the first element.
/// This method call is equivalent to `self.quantile(0..self.len(), i)`.
///
/// Returns `None` if the `i` is out of bounds.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.get_sorted(0), Some(BitVec::pack_sequence_u8(&[1], 3)));
/// assert_eq!(wavelet_matrix.get_sorted(1), Some(BitVec::pack_sequence_u8(&[1], 3)));
/// assert_eq!(wavelet_matrix.get_sorted(2), Some(BitVec::pack_sequence_u8(&[2], 3)));
/// ```
#[must_use]
pub fn get_sorted(&self, i: usize) -> Option<BitVec> {
if i >= self.len() {
None
} else {
Some(self.get_sorted_unchecked(i))
}
}
/// Get the `k`-th smallest element in the encoded sequence in the specified `range`,
/// where `k = 0` returns the smallest element.
/// The `range` is a half-open interval, meaning that the `end` index is exclusive.
/// The `k`-th smallest element is returned as a `u64` numeral.
/// If the number of bits per element exceeds 64, the value is truncated.
///
/// This method does not perform bounds checking.
/// It returns a nonsensical result if the `k` is greater than the size of the range.
/// Use [`quantile_u64`] for a checked version.
///
/// # Panics
/// May panic if the `range` is out of bounds.
/// May instead return 0.
///
/// [`quantile_u64`]: WaveletMatrix::quantile_u64
#[must_use]
pub fn quantile_u64_unchecked(&self, range: Range<usize>, k: usize) -> u64 {
self.partial_quantile_search_u64_unchecked(range, k, 0, 0)
}
/// Internal function to reuse the quantile code for the predecessor and successor search.
/// This function performs the quantile search starting at the given level with the given prefix.
///
/// The function does not perform any checks, so the caller must ensure that the range is valid,
/// and that the prefix is a valid prefix for the given level (i.e. the prefix is not shifted
/// to another level).
#[inline(always)]
fn partial_quantile_search_u64_unchecked(
&self,
mut range: Range<usize>,
mut k: usize,
start_level: usize,
mut prefix: u64,
) -> u64 {
debug_assert!(self.bits_per_element <= 64);
debug_assert!(!range.is_empty());
debug_assert!(range.end <= self.len());
for data in self.data.iter().skip(start_level) {
prefix <<= 1;
let zeros_start = data.rank0(range.start);
let zeros_end = data.rank0(range.end);
let zeros = zeros_end - zeros_start;
if k < zeros {
range.start = zeros_start;
range.end = zeros_end;
} else {
prefix |= 1;
k -= zeros;
range.start = data.rank0 + (range.start - zeros_start);
range.end = data.rank0 + (range.end - zeros_end);
}
}
prefix
}
/// Get the `k`-th smallest element in the encoded sequence in the specified `range`,
/// where `k = 0` returns the smallest element.
/// The `range` is a half-open interval, meaning that the `end` index is exclusive.
/// The `k`-th smallest element is returned as a `u64` numeral.
///
/// Returns `None` if the `range` is out of bounds, or if the number of bits per element exceeds 64,
/// or if `k` is greater than the size of the range.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.quantile_u64(0..3, 0), Some(1));
/// assert_eq!(wavelet_matrix.quantile_u64(0..3, 1), Some(4));
/// assert_eq!(wavelet_matrix.quantile_u64(1..4, 0), Some(1));
/// ```
#[must_use]
pub fn quantile_u64(&self, range: Range<usize>, k: usize) -> Option<u64> {
if range.start >= self.len()
|| range.end > self.len()
|| self.bits_per_element > 64
|| k >= range.end - range.start
{
None
} else {
Some(self.quantile_u64_unchecked(range, k))
}
}
/// Get the `i`-th smallest element in the wavelet matrix.
/// The `i`-th smallest element is returned as a u64 numeral.
///
/// If the number of bits per element exceeds 64, the value is truncated.
///
/// This method does not perform bounds checking.
/// Use [`get_sorted_u64`] for a checked version.
///
/// # Panics
/// May panic if the `i` is out of bounds, or returns an empty bit vector.
///
/// [`get_sorted_u64`]: WaveletMatrix::get_sorted_u64
#[must_use]
pub fn get_sorted_u64_unchecked(&self, i: usize) -> u64 {
self.quantile_u64_unchecked(0..self.len(), i)
}
/// Get the `i`-th smallest element in the entire wavelet matrix.
/// The `i`-th smallest element is returned as a u64 numeral.
///
/// Returns `None` if the `i` is out of bounds, or if the number of bits per element exceeds 64.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.get_sorted_u64(0), Some(1));
/// assert_eq!(wavelet_matrix.get_sorted_u64(1), Some(1));
/// assert_eq!(wavelet_matrix.get_sorted_u64(2), Some(2));
/// ```
#[must_use]
pub fn get_sorted_u64(&self, i: usize) -> Option<u64> {
if i >= self.len() || self.bits_per_element > 64 {
None
} else {
Some(self.get_sorted_u64_unchecked(i))
}
}
/// Get the smallest element in the encoded sequence in the specified `range`.
/// The range is a half-open interval, meaning that the `end` index is exclusive.
/// The smallest element is returned as a `BitVec`,
///
/// This method does not perform bounds checking.
/// Use [`range_min`] for a checked version.
///
/// # Panics
/// May panic if the `range` is out of bounds or if the range is empty.
/// May instead return an empty bit vector.
///
/// [`range_min`]: WaveletMatrix::range_min
#[must_use]
pub fn range_min_unchecked(&self, range: Range<usize>) -> BitVec {
self.quantile_unchecked(range, 0)
}
/// Get the smallest element in the encoded sequence in the specified `range`.
/// The range is a half-open interval, meaning that the `end` index is exclusive.
/// The smallest element is returned as a `BitVec`,
///
/// Returns `None` if the `range` is out of bounds or if the range is empty.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.range_min(0..3), Some(BitVec::pack_sequence_u8(&[1], 3)));
/// assert_eq!(wavelet_matrix.range_min(1..4), Some(BitVec::pack_sequence_u8(&[1], 3)));
/// assert_eq!(wavelet_matrix.range_min(1..3), Some(BitVec::pack_sequence_u8(&[4], 3)));
/// ```
#[must_use]
pub fn range_min(&self, range: Range<usize>) -> Option<BitVec> {
self.quantile(range, 0)
}
/// Get the smallest element in the encoded sequence in the specified `range`.
/// The range is a half-open interval, meaning that the `end` index is exclusive.
/// The smallest element is returned as a `u64` numeral.
/// If the number of bits per element exceeds 64, the value is truncated.
///
/// This method does not perform bounds checking.
/// Use [`range_min_u64`] for a checked version.
///
/// # Panics
/// May panic if the `range` is out of bounds or if the range is empty.
/// May instead return 0.
///
/// [`range_min_u64`]: WaveletMatrix::range_min_u64
#[must_use]
pub fn range_min_u64_unchecked(&self, range: Range<usize>) -> u64 {
self.quantile_u64_unchecked(range, 0)
}
/// Get the smallest element in the encoded sequence in the specified `range`.
/// The range is a half-open interval, meaning that the `end` index is exclusive.
/// The smallest element is returned as a `u64` numeral.
///
/// Returns `None` if the `range` is out of bounds, if the range is empty, or if the number of bits
/// per element exceeds 64.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.range_min_u64(0..3), Some(1));
/// assert_eq!(wavelet_matrix.range_min_u64(1..4), Some(1));
/// assert_eq!(wavelet_matrix.range_min_u64(1..3), Some(4));
/// ```
#[must_use]
pub fn range_min_u64(&self, range: Range<usize>) -> Option<u64> {
self.quantile_u64(range, 0)
}
/// Get the largest element in the encoded sequence in the specified `range`.
/// The range is a half-open interval, meaning that the `end` index is exclusive.
/// The largest element is returned as a `BitVec`,
/// where the least significant bit is the first element.
///
/// This method does not perform bounds checking.
/// Use [`range_max`] for a checked version.
///
/// # Panics
/// May panic if the `range` is out of bounds or if the range is empty.
/// May instead return an empty bit vector.
///
/// [`range_max`]: WaveletMatrix::range_max
#[must_use]
pub fn range_max_unchecked(&self, range: Range<usize>) -> BitVec {
let k = range.end - range.start - 1;
self.quantile_unchecked(range, k)
}
/// Get the largest element in the encoded sequence in the specified `range`.
/// The range is a half-open interval, meaning that the `end` index is exclusive.
/// The largest element is returned as a `BitVec`,
/// where the least significant bit is the first element.
///
/// Returns `None` if the `range` is out of bounds or if the range is empty.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.range_max(0..3), Some(BitVec::pack_sequence_u8(&[4], 3)));
/// assert_eq!(wavelet_matrix.range_max(3..6), Some(BitVec::pack_sequence_u8(&[7], 3)));
/// ```
#[must_use]
pub fn range_max(&self, range: Range<usize>) -> Option<BitVec> {
if range.is_empty() {
None
} else {
let k = range.end - range.start - 1;
self.quantile(range, k)
}
}
/// Get the largest element in the encoded sequence in the specified `range`.
/// The range is a half-open interval, meaning that the `end` index is exclusive.
/// The largest element is returned as a `u64` numeral.
/// If the number of bits per element exceeds 64, the value is truncated.
///
/// This method does not perform bounds checking.
/// Use [`range_max_u64`] for a checked version.
///
/// # Panics
/// May panic if the `range` is out of bounds or if the range is empty.
/// May instead return 0.
///
/// [`range_max_u64`]: WaveletMatrix::range_max_u64
#[must_use]
pub fn range_max_u64_unchecked(&self, range: Range<usize>) -> u64 {
let k = range.end - range.start - 1;
self.quantile_u64_unchecked(range, k)
}
/// Get the largest element in the encoded sequence in the specified `range`.
/// The range is a half-open interval, meaning that the `end` index is exclusive.
/// The largest element is returned as a `u64` numeral.
///
/// Returns `None` if the `range` is out of bounds, if the range is empty, or if the number of bits
/// per element exceeds 64.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.range_max_u64(0..3), Some(4));
/// assert_eq!(wavelet_matrix.range_max_u64(3..6), Some(7));
/// ```
#[must_use]
pub fn range_max_u64(&self, range: Range<usize>) -> Option<u64> {
if range.is_empty() {
None
} else {
let k = range.end - range.start - 1;
self.quantile_u64(range, k)
}
}
/// Get the median element in the encoded sequence in the specified `range`.
/// The range is a half-open interval, meaning that the `end` index is exclusive.
/// The median element is returned as a `BitVec`,
/// where the least significant bit is the first element.
///
/// If the range does not contain an odd number of elements, the position is rounded down.
///
/// This method does not perform bounds checking.
/// Use [`range_median`] for a checked version.
///
/// # Panics
/// May panic if the `range` is out of bounds or if the range is empty.
/// May instead return an empty bit vector.
///
/// [`range_median`]: WaveletMatrix::range_median
#[must_use]
pub fn range_median_unchecked(&self, range: Range<usize>) -> BitVec {
let k = (range.end - 1 - range.start) / 2;
self.quantile_unchecked(range, k)
}
/// Get the median element in the encoded sequence in the specified `range`.
/// The range is a half-open interval, meaning that the `end` index is exclusive.
/// The median element is returned as a `BitVec`,
/// where the least significant bit is the first element.
///
/// If the range does not contain an odd number of elements, the position is rounded down.
///
/// Returns `None` if the `range` is out of bounds or if the range is empty.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.range_median(0..3), Some(BitVec::pack_sequence_u8(&[4], 3)));
/// assert_eq!(wavelet_matrix.range_median(1..4), Some(BitVec::pack_sequence_u8(&[4], 3)));
/// assert_eq!(wavelet_matrix.range_median(0..6), Some(BitVec::pack_sequence_u8(&[2], 3)));
/// ```
#[must_use]
pub fn range_median(&self, range: Range<usize>) -> Option<BitVec> {
if range.is_empty() {
None
} else {
let k = (range.end - 1 - range.start) / 2;
self.quantile(range, k)
}
}
/// Get the median element in the encoded sequence in the specified `range`.
/// The range is a half-open interval, meaning that the `end` index is exclusive.
/// The median element is returned as a `u64` numeral.
/// If the number of bits per element exceeds 64, the value is truncated.
///
/// If the range does not contain an odd number of elements, the position is rounded down.
///
/// This method does not perform bounds checking.
/// Use [`range_median_u64`] for a checked version.
///
/// # Panics
/// May panic if the `range` is out of bounds or if the range is empty.
/// May instead return 0.
///
/// [`range_median_u64`]: WaveletMatrix::range_median_u64
#[must_use]
pub fn range_median_u64_unchecked(&self, range: Range<usize>) -> u64 {
let k = (range.end - 1 - range.start) / 2;
self.quantile_u64_unchecked(range, k)
}
/// Get the median element in the encoded sequence in the specified `range`.
/// The range is a half-open interval, meaning that the `end` index is exclusive.
/// The median element is returned as a `u64` numeral.
///
/// If the range does not contain an odd number of elements, the position is rounded down.
///
/// Returns `None` if the `range` is out of bounds, if the range is empty, or if the number of bits
/// per element exceeds 64.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.range_median_u64(0..3), Some(4));
/// assert_eq!(wavelet_matrix.range_median_u64(1..4), Some(4));
/// assert_eq!(wavelet_matrix.range_median_u64(0..6), Some(2));
/// ```
#[must_use]
pub fn range_median_u64(&self, range: Range<usize>) -> Option<u64> {
if range.is_empty() || self.bits_per_element > 64 || range.end > self.len() {
None
} else {
let k = (range.end - 1 - range.start) / 2;
self.quantile_u64(range, k)
}
}
/// Get the predecessor of the given `symbol` in the given `range`.
/// This is a private generic helper function to implement the public `predecessor` functions.
///
/// The read and write access to the query and result values are abstracted by the `Reader` and `Writer` closures.
#[inline(always)] // even though the function is pretty large, inlining probably gets rid of the closure calls in favor of static calls
fn predecessor_generic_unchecked<
T: Clone,
Reader: Fn(usize, &T) -> u64,
Writer: Fn(u64, usize, &mut T),
Quantile: Fn(&Self, Range<usize>, usize, usize, T) -> T,
>(
&self,
mut range: Range<usize>,
symbol: &T,
mut result_value: T,
bit_reader: Reader,
result_writer: Writer,
quantile_search: Quantile,
) -> Option<T> {
// the bit-prefix at the last node where we could go to an interval with smaller elements,
// i.e. where we need to go if the current prefix has no elements smaller than the query
let mut last_smaller_prefix = result_value.clone();
// the level of the last node where we could go to an interval with smaller elements
let mut last_one_level: Option<usize> = None;
// the range of the last node where we could go to an interval with smaller elements
let mut next_smaller_range: Option<Range<usize>> = None;
for (level, data) in self.data.iter().enumerate() {
let query_bit = bit_reader(level, symbol);
// read the amount of elements with the current result-prefix plus one 0 bit.
// if the query_bit is 1, we can calculate the amount of elements with the result-prefix
// plus one 1 from there
let zeros_start = data.rank0(range.start);
let zeros_end = data.rank0(range.end);
let elements_zero = zeros_end - zeros_start;
if query_bit == 0 {
if elements_zero == 0 {
// if our query bit is zero in this level and suddenly our new interval is empty,
// all elements that were in the previous interval are bigger than the query element,
// because they all have a 1 in the current level.
// this means the predecessor is the largest element in the last smaller interval,
// i.e. the interval that has a 0 bit at the last level where our prefix had a 1 bit.
return next_smaller_range.map(|r| {
let idx = r.end - r.start - 1;
result_writer(0, last_one_level.unwrap(), &mut last_smaller_prefix);
quantile_search(
self,
r,
idx,
last_one_level.unwrap() + 1,
last_smaller_prefix,
)
});
}
// update the prefix
result_writer(0, level, &mut result_value);
// update the range to the interval of the new prefix
range.start = zeros_start;
range.end = zeros_end;
} else {
if elements_zero == range.end - range.start {
// if our query element is 1 in this level and suddenly our new interval is empty,
// all elements that were in the previous interval are smaller than the query element,
// because they all have a 0 in the current level.
// this means the predecessor is the largest element in the last level's interval.
let idx = range.end - range.start - 1;
return Some(quantile_search(self, range, idx, level, result_value));
}
// if the other interval is not empty, we update the last smaller interval to the last interval where we can switch to a 0 prefix
if !(zeros_start..zeros_end).is_empty() {
last_one_level = Some(level);
next_smaller_range = Some(zeros_start..zeros_end);
last_smaller_prefix = result_value.clone();
}
// update the prefix
result_writer(1, level, &mut result_value);
// update the range to the interval of the new prefix
range.start = data.rank0 + (range.start - zeros_start);
range.end = data.rank0 + (range.end - zeros_end);
}
}
Some(result_value)
}
/// Get the predecessor of the given `symbol` in the given `range`.
/// The `symbol` is a `k`-bit word encoded in a [`BitVec`],
/// where the least significant bit is the first element, and `k` is the number of bits per element
/// in the wavelet matrix.
/// The `symbol` does not have to be in the encoded sequence.
/// The predecessor is the largest element in the `range` that is smaller than or equal
/// to the `symbol`.
///
/// Returns `None` if the number of bits in the `symbol` is not equal to `k`,
/// if the range is empty, if the wavelet matrix is empty, if the range is out of bounds,
/// or if the `symbol` is smaller than all elements in the range.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.predecessor(0..3, &BitVec::pack_sequence_u8(&[7], 3)), Some(BitVec::pack_sequence_u8(&[4], 3)));
/// assert_eq!(wavelet_matrix.predecessor(0..3, &BitVec::pack_sequence_u8(&[4], 3)), Some(BitVec::pack_sequence_u8(&[4], 3)));
/// assert_eq!(wavelet_matrix.predecessor(0..6, &BitVec::pack_sequence_u8(&[7], 3)), Some(BitVec::pack_sequence_u8(&[7], 3)));
/// ```
///
/// [`BitVec`]: BitVec
#[must_use]
pub fn predecessor(&self, range: Range<usize>, symbol: &BitVec) -> Option<BitVec> {
if symbol.len() != self.bits_per_element as usize
|| range.is_empty()
|| self.is_empty()
|| range.end > self.len()
{
return None;
}
self.predecessor_generic_unchecked(
range,
symbol,
BitVec::from_zeros(self.bits_per_element as usize),
|level, symbol| symbol.get_unchecked((self.bits_per_element - 1) as usize - level),
|bit, level, result| {
result.set_unchecked((self.bits_per_element - 1) as usize - level, bit);
},
Self::partial_quantile_search_unchecked,
)
}
/// Get the predecessor of the given `symbol` in the given `range`.
/// The `symbol` is a `k`-bit word encoded in a `u64` numeral,
/// where k is less than or equal to 64.
/// The `symbol` does not have to be in the encoded sequence.
/// The predecessor is the largest element in the `range` that is smaller than or equal
/// to the `symbol`.
///
/// Returns `None` if the number of bits in the matrix is greater than 64,
/// if the range is empty, if the wavelet matrix is empty, if the range is out of bounds,
/// or if the `symbol` is smaller than all elements in the range.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.predecessor_u64(0..3, 7), Some(4));
/// assert_eq!(wavelet_matrix.predecessor_u64(0..3, 4), Some(4));
/// assert_eq!(wavelet_matrix.predecessor_u64(0..6, 7), Some(7));
/// ```
#[must_use]
pub fn predecessor_u64(&self, range: Range<usize>, symbol: u64) -> Option<u64> {
if self.bits_per_element > 64
|| range.is_empty()
|| self.is_empty()
|| range.end > self.len()
{
return None;
}
self.predecessor_generic_unchecked(
range,
&symbol,
0,
|level, symbol| symbol >> ((self.bits_per_element - 1) as usize - level) & 1,
|bit, _level, result| {
// we ignore the level here, and instead rely on the fact that the bits are set in order.
// we have to do that, because the quantile_search_u64 does the same.
*result <<= 1;
*result |= bit;
},
Self::partial_quantile_search_u64_unchecked,
)
}
#[inline(always)]
fn successor_generic_unchecked<
T: Clone,
Reader: Fn(usize, &T) -> u64,
Writer: Fn(u64, usize, &mut T),
Quantile: Fn(&Self, Range<usize>, usize, usize, T) -> T,
>(
&self,
mut range: Range<usize>,
symbol: &T,
mut result_value: T,
bit_reader: Reader,
result_writer: Writer,
quantile_search: Quantile,
) -> Option<T> {
// the bit-prefix at the last node where we could go to an interval with larger elements,
// i.e. where we need to go if the current prefix has no elements larger than the query
let mut last_larger_prefix = result_value.clone();
// the level of the last node where we could go to an interval with larger elements
let mut last_zero_level: Option<usize> = None;
// the range of the last node where we could go to an interval with larger elements
let mut next_larger_range: Option<Range<usize>> = None;
for (level, data) in self.data.iter().enumerate() {
let query_bit = bit_reader(level, symbol);
// read the amount of elements with the current result-prefix plus one 0 bit.
// if the query_bit is 1, we can calculate the amount of elements with the result-prefix
// plus one 1 from there
let zeros_start = data.rank0(range.start);
let zeros_end = data.rank0(range.end);
let elements_zero = zeros_end - zeros_start;
if query_bit == 0 {
if elements_zero == 0 {
// if our query element is 0 in this level and suddenly our new interval is empty,
// all elements that were in the previous interval are larger than the query element,
// because they all have a 1 in the current level.
// this means the successor is the smallest element in the last level's interval.
return Some(quantile_search(self, range, 0, level, result_value));
}
// if the other interval is not empty, we update the last interval where we can switch to a prefix with a 1
if !(data.rank0 + (range.start - zeros_start)..data.rank0 + (range.end - zeros_end))
.is_empty()
{
last_zero_level = Some(level);
next_larger_range = Some(
data.rank0 + (range.start - zeros_start)
..data.rank0 + (range.end - zeros_end),
);
last_larger_prefix = result_value.clone();
}
// update the prefix
result_writer(0, level, &mut result_value);
// update the range to the interval of the new prefix
range.start = zeros_start;
range.end = zeros_end;
} else {
if elements_zero == range.end - range.start {
// if our query bit is 1 in this level and suddenly our new interval is empty,
// all elements that were in the previous interval are smaller than the query element,
// because they all have a 0 in the current level.
// this means the successor is the smallest element in the last interval with a larger prefix,
// i.e. the interval that has a 1 bit at the last level where our prefix had a 0 bit.
return next_larger_range.map(|r| {
result_writer(1, last_zero_level.unwrap(), &mut last_larger_prefix);
quantile_search(
self,
r,
0,
last_zero_level.unwrap() + 1,
last_larger_prefix,
)
});
}
// update the prefix
result_writer(1, level, &mut result_value);
// update the range to the interval of the new prefix
range.start = data.rank0 + (range.start - zeros_start);
range.end = data.rank0 + (range.end - zeros_end);
}
}
Some(result_value)
}
/// Get the successor of the given `symbol` in the given range.
/// The `symbol` is a `k`-bit word encoded in a [`BitVec`],
/// where the least significant bit is the first element, and `k` is the number of bits per element
/// in the wavelet matrix.
/// The `symbol` does not have to be in the encoded sequence.
/// The successor is the smallest element in the range that is greater than or equal
/// to the `symbol`.
///
/// Returns `None` if the number of bits in the `symbol` is not equal to `k`,
/// if the range is empty, if the wavelet matrix is empty, if the range is out of bounds,
/// or if the `symbol` is greater than all elements in the range.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.successor(0..3, &BitVec::pack_sequence_u8(&[2], 3)), Some(BitVec::pack_sequence_u8(&[4], 3)));
/// assert_eq!(wavelet_matrix.successor(0..3, &BitVec::pack_sequence_u8(&[5], 3)), None);
/// assert_eq!(wavelet_matrix.successor(0..6, &BitVec::pack_sequence_u8(&[2], 3)), Some(BitVec::pack_sequence_u8(&[2], 3)));
/// ```
///
/// [`BitVec`]: BitVec
#[must_use]
pub fn successor(&self, range: Range<usize>, symbol: &BitVec) -> Option<BitVec> {
if symbol.len() != self.bits_per_element as usize
|| range.is_empty()
|| self.is_empty()
|| range.end > self.len()
{
return None;
}
self.successor_generic_unchecked(
range,
symbol,
BitVec::from_zeros(self.bits_per_element as usize),
|level, symbol| symbol.get_unchecked((self.bits_per_element - 1) as usize - level),
|bit, level, result| {
result.set_unchecked((self.bits_per_element - 1) as usize - level, bit);
},
Self::partial_quantile_search_unchecked,
)
}
/// Get the successor of the given `symbol` in the given range.
/// The `symbol` is a `k`-bit word encoded in a `u64` numeral,
/// where k is less than or equal to 64.
/// The `symbol` does not have to be in the encoded sequence.
/// The successor is the smallest element in the range that is greater than or equal
/// to the `symbol`.
///
/// Returns `None` if the number of bits in the matrix is greater than 64,
/// if the range is empty, if the wavelet matrix is empty, if the range is out of bounds,
/// or if the `symbol` is greater than all elements in the range.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// assert_eq!(wavelet_matrix.successor_u64(0..3, 2), Some(4));
/// assert_eq!(wavelet_matrix.successor_u64(0..3, 5), None);
/// assert_eq!(wavelet_matrix.successor_u64(0..6, 2), Some(2));
/// ```
#[must_use]
pub fn successor_u64(&self, range: Range<usize>, symbol: u64) -> Option<u64> {
if self.bits_per_element > 64
|| range.is_empty()
|| self.is_empty()
|| range.end > self.len()
{
return None;
}
self.successor_generic_unchecked(
range,
&symbol,
0,
|level, symbol| symbol >> ((self.bits_per_element - 1) as usize - level) & 1,
|bit, _level, result| {
// we ignore the level here, and instead rely on the fact that the bits are set in order.
// we have to do that, because the quantile_search_u64 does the same.
*result <<= 1;
*result |= bit;
},
Self::partial_quantile_search_u64_unchecked,
)
}
/// Get an iterator over the elements of the encoded sequence.
/// The iterator yields `u64` elements.
/// If the number of bits per element exceeds 64, `None` is returned.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// let mut iter = wavelet_matrix.iter_u64().unwrap();
/// assert_eq!(iter.collect::<Vec<_>>(), vec![1, 4, 4, 1, 2, 7]);
/// ```
#[must_use]
pub fn iter_u64(&self) -> Option<WaveletNumRefIter> {
if self.bits_per_element > 64 {
None
} else {
Some(WaveletNumRefIter::new(self))
}
}
/// Turn the encoded sequence into an iterator.
/// The iterator yields `u64` elements.
/// If the number of bits per element exceeds 64, `None` is returned.
#[must_use]
pub fn into_iter_u64(self) -> Option<WaveletNumIter> {
if self.bits_per_element > 64 {
None
} else {
Some(WaveletNumIter::new(self))
}
}
/// Get an iterator over the sorted elements of the encoded sequence.
/// The iterator yields `BitVec` elements.
///
/// See also [`iter_sorted_u64`] for an iterator that yields `u64` elements.
#[must_use]
pub fn iter_sorted(&self) -> WaveletSortedRefIter {
WaveletSortedRefIter::new(self)
}
/// Turn the encoded sequence into an iterator over the sorted sequence.
/// The iterator yields `BitVec` elements.
#[must_use]
pub fn into_iter_sorted(self) -> WaveletSortedIter {
WaveletSortedIter::new(self)
}
/// Get an iterator over the sorted elements of the encoded sequence.
/// The iterator yields `u64` elements.
/// If the number of bits per element exceeds 64, `None` is returned.
///
/// # Example
/// ```
/// use vers_vecs::{BitVec, WaveletMatrix};
///
/// let bit_vec = BitVec::pack_sequence_u8(&[1, 4, 4, 1, 2, 7], 3);
/// let wavelet_matrix = WaveletMatrix::from_bit_vec(&bit_vec, 3);
///
/// let mut iter = wavelet_matrix.iter_sorted_u64().unwrap();
/// assert_eq!(iter.collect::<Vec<_>>(), vec![1, 1, 2, 4, 4, 7]);
/// ```
#[must_use]
pub fn iter_sorted_u64(&self) -> Option<WaveletSortedNumRefIter> {
if self.bits_per_element > 64 {
None
} else {
Some(WaveletSortedNumRefIter::new(self))
}
}
/// Turn the encoded sequence into an iterator over the sorted sequence.
/// The iterator yields `u64` elements.
/// If the number of bits per element exceeds 64, `None` is returned.
#[must_use]
pub fn into_iter_sorted_u64(self) -> Option<WaveletSortedNumIter> {
if self.bits_per_element > 64 {
None
} else {
Some(WaveletSortedNumIter::new(self))
}
}
/// Get the number of bits per element in the alphabet of the encoded sequence.
#[must_use]
pub fn bit_len(&self) -> u16 {
self.bits_per_element
}
/// Get the number of elements stored in the encoded sequence.
#[must_use]
pub fn len(&self) -> usize {
if self.data.is_empty() {
0
} else {
self.data[0].len()
}
}
/// Check if the wavelet matrix is empty.
#[must_use]
pub fn is_empty(&self) -> bool {
self.len() == 0
}
/// Get the number of bytes allocated on the heap for the wavelet matrix.
/// This does not include memory that is allocated but unused due to allocation policies of
/// internal data structures.
#[must_use]
pub fn heap_size(&self) -> usize {
self.data.iter().map(RsVec::heap_size).sum::<usize>()
}
}
impl_vector_iterator!(
WaveletMatrix,
WaveletIter,
WaveletRefIter,
get_value_unchecked,
get_value,
BitVec
);
impl_vector_iterator!(
WaveletMatrix,
WaveletNumIter,
WaveletNumRefIter,
get_u64_unchecked,
get_u64,
u64,
special
);
impl_vector_iterator!(
WaveletMatrix,
WaveletSortedIter,
WaveletSortedRefIter,
get_sorted_unchecked,
get_sorted,
BitVec,
special
);
impl_vector_iterator!(
WaveletMatrix,
WaveletSortedNumIter,
WaveletSortedNumRefIter,
get_sorted_u64_unchecked,
get_sorted_u64,
u64,
special
);
#[cfg(test)]
mod tests;