Enum varlociraptor::cli::Varlociraptor

pub enum Varlociraptor {
    Preprocess {
        kind: PreprocessKind,
    },
    Call {
        kind: CallKind,
    },
    FilterCalls {
        method: FilterMethod,
    },
    DecodePHRED,
    Estimate {
        kind: EstimateKind,
    },
    Plot {
        kind: PlotKind,
    },
    Genotype,
}

Variants

Preprocess

Fields

kind: PreprocessKind

Call

Fields

kind: CallKind

FilterCalls

Fields

method: FilterMethod

DecodePHRED

Estimate

Fields

kind: EstimateKind

Plot

Fields

kind: PlotKind

Genotype

Trait Implementations

impl Clone for Varlociraptor

fn clone(&self) -> Varlociraptor

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Varlociraptor

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for Varlociraptor

fn default() -> Self

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for Varlociraptor

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Serialize for Varlociraptor

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>where __S: Serializer,

Serialize this value into the given Serde serializer.

impl StructOpt for Varlociraptor

fn clap<'a, 'b>() -> App<'a, 'b>

Returns clap::App corresponding to the struct.

fn from_clap(matches: &ArgMatches<'_>) -> Self

Builds the struct from clap::ArgMatches. It’s guaranteed to succeed if matches originates from an App generated by StructOpt::clap called on the same type, otherwise it must panic.

fn from_args() -> Selfwhere Self: Sized,

Builds the struct from the command line arguments (std::env::args_os). Calls clap::Error::exit on failure, printing the error message and aborting the program.

fn from_args_safe() -> Result<Self, Error>where Self: Sized,

Builds the struct from the command line arguments (std::env::args_os). Unlike StructOpt::from_args, returns clap::Error on failure instead of aborting the program, so calling .exit is up to you.

fn from_iter<I>(iter: I) -> Selfwhere Self: Sized, I: IntoIterator, <I as IntoIterator>::Item: Into<OsString> + Clone,

Gets the struct from any iterator such as a Vec of your making. Print the error message and quit the program in case of failure.

fn from_iter_safe<I>(iter: I) -> Result<Self, Error>where Self: Sized, I: IntoIterator, <I as IntoIterator>::Item: Into<OsString> + Clone,

Gets the struct from any iterator such as a Vec of your making.