pub enum CallKind {
    Variants {
Show 16 fields mode: VariantCallMode, reference: PathBuf, candidates: Option<PathBuf>, output: Option<PathBuf>, spurious_ins_rate: f64, spurious_del_rate: f64, spurious_insext_rate: f64, spurious_delext_rate: f64, protocol_strandedness: ProtocolStrandedness, omit_snvs: bool, omit_indels: bool, max_indel_len: u32, indel_window: u32, max_depth: usize, testcase_locus: Option<String>, testcase_prefix: Option<String>,
}, CNVs { calls: Option<PathBuf>, output: Option<PathBuf>, purity: f64, min_bayes_factor: f64, max_dist: u32, threads: usize, }, }

Variants

Variants

Fields

reference: PathBuf
candidates: Option<PathBuf>
output: Option<PathBuf>
spurious_ins_rate: f64
spurious_del_rate: f64
spurious_insext_rate: f64
spurious_delext_rate: f64
protocol_strandedness: ProtocolStrandedness
omit_snvs: bool
omit_indels: bool
max_indel_len: u32
indel_window: u32
max_depth: usize
testcase_locus: Option<String>
testcase_prefix: Option<String>

CNVs

Fields

calls: Option<PathBuf>
output: Option<PathBuf>
purity: f64
min_bayes_factor: f64
max_dist: u32
threads: usize

Trait Implementations

Returns a copy of the value. Read more
Performs copy-assignment from source. Read more
Formats the value using the given formatter. Read more
Deserialize this value from the given Serde deserializer. Read more
Serialize this value into the given Serde serializer. Read more
Returns clap::App corresponding to the struct.
Builds the struct from clap::ArgMatches. It’s guaranteed to succeed if matches originates from an App generated by StructOpt::clap called on the same type, otherwise it must panic. Read more
Builds the struct from the command line arguments (std::env::args_os). Calls clap::Error::exit on failure, printing the error message and aborting the program. Read more
Builds the struct from the command line arguments (std::env::args_os). Unlike StructOpt::from_args, returns clap::Error on failure instead of aborting the program, so calling .exit is up to you. Read more
Gets the struct from any iterator such as a Vec of your making. Print the error message and quit the program in case of failure. Read more
Gets the struct from any iterator such as a Vec of your making. Read more

Auto Trait Implementations

Blanket Implementations

Gets the TypeId of self. Read more
Immutably borrows from an owned value. Read more
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Converts self into T using Into<T>. Read more
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Causes self to use its Binary implementation when Debug-formatted.
Causes self to use its Display implementation when Debug-formatted. Read more
Causes self to use its LowerExp implementation when Debug-formatted. Read more
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Causes self to use its Octal implementation when Debug-formatted.
Causes self to use its Pointer implementation when Debug-formatted. Read more
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Returns the argument unchanged.

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

Pipes by value. This is generally the method you want to use. Read more
Borrows self and passes that borrow into the pipe function. Read more
Mutably borrows self and passes that borrow into the pipe function. Read more
Borrows self, then passes self.borrow() into the pipe function. Read more
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Borrows self, then passes self.as_ref() into the pipe function.
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Borrows self, then passes self.deref() into the pipe function.
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Pipes a value into a function that cannot ordinarily be called in suffix position. Read more
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Pipes a trait mutable borrow into a function that cannot normally be called in suffix position. Read more
Pipes a trait borrow into a function that cannot normally be called in suffix position. Read more
Pipes a trait mutable borrow into a function that cannot normally be called in suffix position. Read more
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Pipes a mutable dereference into a function that cannot normally be called in suffix position. Read more
Pipes a reference into a function that cannot ordinarily be called in suffix position. Read more
Pipes a mutable reference into a function that cannot ordinarily be called in suffix position. Read more
The alignment of pointer.
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Should always be Self
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Checks if self is actually part of its subset T (and can be converted to it).
Use with care! Same as self.to_subset but without any property checks. Always succeeds.
The inclusion map: converts self to the equivalent element of its superset.
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Immutable access to the Deref::Target of a value. Read more
Mutable access to the Deref::Target of a value. Read more
Calls .tap() only in debug builds, and is erased in release builds.
Calls .tap_mut() only in debug builds, and is erased in release builds. Read more
Calls .tap_borrow() only in debug builds, and is erased in release builds. Read more
Calls .tap_borrow_mut() only in debug builds, and is erased in release builds. Read more
Calls .tap_ref() only in debug builds, and is erased in release builds. Read more
Calls .tap_ref_mut() only in debug builds, and is erased in release builds. Read more
Calls .tap_deref() only in debug builds, and is erased in release builds. Read more
Calls .tap_deref_mut() only in debug builds, and is erased in release builds. Read more
Provides immutable access for inspection. Read more
Calls tap in debug builds, and does nothing in release builds.
Provides mutable access for modification. Read more
Calls tap_mut in debug builds, and does nothing in release builds.
Provides immutable access to the reference for inspection.
Calls tap_ref in debug builds, and does nothing in release builds.
Provides mutable access to the reference for modification.
Calls tap_ref_mut in debug builds, and does nothing in release builds.
Provides immutable access to the borrow for inspection. Read more
Calls tap_borrow in debug builds, and does nothing in release builds.
Provides mutable access to the borrow for modification.
Calls tap_borrow_mut in debug builds, and does nothing in release builds. Read more
Immutably dereferences self for inspection.
Calls tap_deref in debug builds, and does nothing in release builds.
Mutably dereferences self for modification.
Calls tap_deref_mut in debug builds, and does nothing in release builds. Read more
The resulting type after obtaining ownership.
Creates owned data from borrowed data, usually by cloning. Read more
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Attempts to convert self into T using TryInto<T>. Read more
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The type returned in the event of a conversion error.
Performs the conversion.
The type returned in the event of a conversion error.
Performs the conversion.