Enum varlociraptor::cli::CallKind

pub enum CallKind {
    Variants {
        mode: VariantCallMode,
        omit_strand_bias: bool,
        omit_read_orientation_bias: bool,
        testcase_locus: Option<String>,
        testcase_prefix: Option<String>,
        output: Option<PathBuf>,
    },
}

Variants

Variants

Fields of Variants

mode: VariantCallModeomit_strand_bias: boolomit_read_orientation_bias: booltestcase_locus: Option<String>testcase_prefix: Option<String>output: Option<PathBuf>

Trait Implementations

impl Clone for CallKind

pub fn clone(&self) -> CallKind

Returns a copy of the value.

pub fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for CallKind

pub fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for CallKind

pub fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error> where
    __D: Deserializer<'de>, 

Deserialize this value from the given Serde deserializer.

impl Serialize for CallKind

pub fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error> where
    __S: Serializer, 

Serialize this value into the given Serde serializer.

impl StructOpt for CallKind

pub fn clap<'a, 'b>() -> App<'a, 'b>

Returns clap::App corresponding to the struct.

pub fn from_clap(matches: &ArgMatches<'_>) -> Self

Builds the struct from clap::ArgMatches. It's guaranteed to succeed if matches originates from an App generated by StructOpt::clap called on the same type, otherwise it must panic.

pub fn from_args() -> Self

Builds the struct from the command line arguments (std::env::args_os). Calls clap::Error::exit on failure, printing the error message and aborting the program.

pub fn from_args_safe() -> Result<Self, Error>

Builds the struct from the command line arguments (std::env::args_os). Unlike StructOpt::from_args, returns clap::Error on failure instead of aborting the program, so calling .exit is up to you.

pub fn from_iter<I>(iter: I) -> Self where
    I: IntoIterator,
    <I as IntoIterator>::Item: Into<OsString>,
    <I as IntoIterator>::Item: Clone, 

Gets the struct from any iterator such as a Vec of your making. Print the error message and quit the program in case of failure.

pub fn from_iter_safe<I>(iter: I) -> Result<Self, Error> where
    I: IntoIterator,
    <I as IntoIterator>::Item: Into<OsString>,
    <I as IntoIterator>::Item: Clone, 

Gets the struct from any iterator such as a Vec of your making.

impl StructOptInternal for CallKind

pub fn augment_clap<'a, 'b>(app: App<'a, 'b>) -> App<'a, 'b>

pub fn from_subcommand<'a, 'b>(
    sub: (&'b str, Option<&'b ArgMatches<'a>>)
) -> Option<Self>

pub fn is_subcommand() -> bool