Struct varlociraptor::model::evidence::reads::IndelGapParams

pub struct IndelGapParams {
    pub prob_insertion_artifact: LogProb,
    pub prob_deletion_artifact: LogProb,
    pub prob_insertion_extend_artifact: LogProb,
    pub prob_deletion_extend_artifact: LogProb,
}

Gap parameters for PairHMM.

Fields

prob_insertion_artifact: LogProb

prob_deletion_artifact: LogProb

prob_insertion_extend_artifact: LogProb

prob_deletion_extend_artifact: LogProb

Trait Implementations

impl Clone for IndelGapParams

fn clone(&self) -> IndelGapParams

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for IndelGapParams

fn fmt(&self, f: &mut Formatter) -> Result

Formats the value using the given formatter.

impl GapParameters for IndelGapParams

fn prob_gap_x(&self) -> LogProb

Probability to open gap in x.

fn prob_gap_y(&self) -> LogProb

Probability to open gap in y.

fn prob_gap_x_extend(&self) -> LogProb

Probability to extend gap in x.

fn prob_gap_y_extend(&self) -> LogProb

Probability to extend gap in y.

impl StartEndGapParameters for IndelGapParams

fn free_start_gap_x(&self) -> bool

Semiglobal alignment: return true.

fn free_end_gap_x(&self) -> bool

Semiglobal alignment: return true.

fn prob_start_gap_x(&self, _: usize) -> LogProb

Semiglobal alignment: return 1.0.