Struct varlociraptor::calling::cnvs::Call

pub struct Call { /* fields omitted */ }

Methods

impl Call

pub fn new(record: &mut Record) -> Result<Option<Self>>

pub fn prob_allele_freq_tumor(&self, true_allele_freq: AlleleFreq) -> LogProb

pub fn prob_allele_freq_normal_het(&self) -> LogProb

pub fn prob_depth_tumor(&self, true_depth: f64) -> LogProb

Trait Implementations

impl Debug for Call

fn fmt(&self, f: &mut Formatter) -> Result

Formats the value using the given formatter.

impl Model<Call> for HMM

fn num_states(&self) -> usize

The number of states in the model.

fn states(&self) -> StateIter

Return iterator over the states of an HMM.

fn transitions(&self) -> StateTransitionIter

Returns an iterator of all transitions.

fn transition_prob(&self, from: State, to: State) -> LogProb

Transition probability between two states from and to.

fn initial_prob(&self, _: State) -> LogProb

Initial probability given the HMM state.

fn observation_prob(&self, state: State, call: &Call) -> LogProb

Probability for the given observation in the given state.

fn transition_prob_idx(&self, from: State, to: State, _to_idx: usize) -> LogProb

Transition probability between two states from and to for observation with index _to_idx (index of to).