Enum varlociraptor::cli::CallKind

pub enum CallKind {
    Variants {
        mode: VariantCallMode,
        testcase_locus: Option<String>,
        testcase_prefix: Option<String>,
        output: Option<PathBuf>,
    },
    CNVs {
        calls: Option<PathBuf>,
        output: Option<PathBuf>,
        purity: f64,
        min_bayes_factor: f64,
        max_dist: u32,
        threads: usize,
    },
}

Variants

Variants

Fields of Variants

mode: VariantCallModetestcase_locus: Option<String>testcase_prefix: Option<String>output: Option<PathBuf>

CNVs

Fields of CNVs

calls: Option<PathBuf>output: Option<PathBuf>purity: f64min_bayes_factor: f64max_dist: u32threads: usize

Trait Implementations

impl Clone for CallKind

fn clone(&self) -> CallKind

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for CallKind

fn fmt(&self, f: &mut Formatter) -> Result

Formats the value using the given formatter.

impl Serialize for CallKind

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error> where
    __S: Serializer, 

Serialize this value into the given Serde serializer.

impl<'de> Deserialize<'de> for CallKind

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error> where
    __D: Deserializer<'de>, 

Deserialize this value from the given Serde deserializer.

impl StructOpt for CallKind

fn clap<'a, 'b>() -> App<'a, 'b>

Returns the corresponding clap::App.

fn from_clap(matches: &ArgMatches) -> Self

Creates the struct from clap::ArgMatches. It cannot fail with a parameter generated by clap by construction.

fn from_args() -> Self

Gets the struct from the command line arguments. Print the error message and quit the program in case of failure.

fn from_iter<I>(iter: I) -> Self where
    I: IntoIterator,
    <I as IntoIterator>::Item: Into<OsString>,
    <I as IntoIterator>::Item: Clone, 

Gets the struct from any iterator such as a Vec of your making. Print the error message and quit the program in case of failure.

fn from_iter_safe<I>(iter: I) -> Result<Self, Error> where
    I: IntoIterator,
    <I as IntoIterator>::Item: Into<OsString>,
    <I as IntoIterator>::Item: Clone, 

Gets the struct from any iterator such as a Vec of your making.