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#[macro_use]
extern crate log;
#[macro_use]
extern crate approx;
#[macro_use]
extern crate serde_derive;
#[macro_use]
extern crate lazy_static;
extern crate askama;
#[macro_use]
extern crate derive_new;
#[macro_use]
extern crate pest_derive;
#[macro_use]
extern crate getset;
#[macro_use]
extern crate snafu;
#[macro_use]
extern crate strum_macros;
#[macro_use]
extern crate derive_builder;
pub mod calling;
pub mod cli;
pub mod constants;
pub mod conversion;
pub mod errors;
pub mod estimation;
pub mod filtration;
pub mod grammar;
pub mod model;
pub mod testcase;
pub mod utils;
pub use crate::estimation::alignment_properties::{AlignmentProperties, InsertSize};
pub use crate::model::likelihood;
pub use crate::model::modes;
pub use crate::model::sample::Sample;
pub trait Event {
fn name(&self) -> &str;
fn tag_name(&self, prefix: &str) -> String {
format!("{}_{}", prefix, self.name().to_ascii_uppercase())
}
fn header_entry(&self, prefix: &str, desc: &str) -> String {
format!(
"##INFO=<ID={tag_name},Number=A,Type=Float,\
Description=\"{desc} {name} variant\">",
name = self.name().replace("_", "-"),
desc = desc,
tag_name = &self.tag_name(prefix)
)
}
}
pub struct ComplementEvent {
pub name: String,
}
impl Event for ComplementEvent {
fn name(&self) -> &str {
&self.name
}
}
#[derive(Debug)]
pub struct SimpleEvent {
pub name: String,
}
impl Event for SimpleEvent {
fn name(&self) -> &str {
&self.name
}
}