Struct varlociraptor::model::likelihood::SampleLikelihoodModel

pub struct SampleLikelihoodModel {}

Likelihood model for single sample.

Methods

impl SampleLikelihoodModel

pub fn new() -> Self

Create new model.

Trait Implementations

impl Clone for SampleLikelihoodModel

fn clone(&self) -> SampleLikelihoodModel

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Copy for SampleLikelihoodModel

impl Default for SampleLikelihoodModel

fn default() -> SampleLikelihoodModel

Returns the "default value" for a type.

impl Debug for SampleLikelihoodModel

fn fmt(&self, f: &mut Formatter) -> Result

Formats the value using the given formatter.

impl Likelihood<BTreeMap<Event, LogProb>> for SampleLikelihoodModel

type Event = Event

type Data = Pileup

fn compute(
    &self,
    event: &Event,
    pileup: &Pileup,
    cache: &mut SingleSampleCache
) -> LogProb

Likelihood to observe a pileup given allele frequencies for case and control.