[−][src]Module varlociraptor::utils
Structs
ReferenceBuffer | A lazy buffer for reference sequences. |
Enums
Overlap | Describes whether read overlaps a variant in a valid or invalid (too large overlap) way. |
Constants
NUMERICAL_EPSILON |
Functions
collect_prob_dist | Collect distribution of posterior probabilities from a VCF file that has been written by varlociraptor. |
collect_variants | Collect variants from a given ´bcf::Record`. |
events_to_tags | |
evidence_kass_raftery_to_letter | |
filter_by_threshold | Filter a VCF record stream by a minimum threshold on the sum of posterior probabilities of a given set of Events. The threshold should be an informative false discovery rate (FDR) threshold, e.g. determined with the varlociraptor FDR control functionality. |
filter_calls | Filter calls by a given function. |
generalized_cigar | |
is_repeat_variant | Returns true if given variant is located in a repeat region. |
max_prob | Return the greater of two given probabilities. |
select | Select values with given indices from a slice and return them as an iterator. |
tags_prob_sum | Sum up in log space the probabilities of the given tags for all variants of vartype in the given BCF record. |