Struct varlociraptor::model::sample::RecordBuffer

pub struct RecordBuffer {
    pub window: u32,
    // some fields omitted
}

Ringbuffer of BAM records. This data structure ensures that no bam record is read twice while extracting observations for given variants.

Fields

window: u32

Methods

impl RecordBuffer

pub fn new(bam: IndexedReader, window: u32, use_secondary: bool) -> Self

Create a new RecordBuffer.

pub fn fill(
    &mut self,
    chrom: &[u8],
    start: u32,
    end: u32
) -> Result<(), Box<dyn Error>>

Fill buffer around the given interval.

pub fn iter(&self) -> Iter<Record>

Trait Implementations

impl Sync for RecordBuffer

impl Send for RecordBuffer