Struct varlociraptor::model::evidence::observation::ObservationBuilder

pub struct ObservationBuilder { /* fields omitted */ }

Builder for Observation.

Methods

impl ObservationBuilder

pub fn prob_mapping(&mut self, value: LogProb) -> &mut Self

Posterior probability that the read/read-pair has been mapped correctly (1 - MAPQ).

pub fn prob_mismapping(&mut self, value: LogProb) -> &mut Self

Posterior probability that the read/read-pair has been mapped incorrectly (MAPQ).

pub fn prob_alt(&mut self, value: LogProb) -> &mut Self

Probability that the read/read-pair comes from the alternative allele.

pub fn prob_ref(&mut self, value: LogProb) -> &mut Self

Probability that the read/read-pair comes from the reference allele.

pub fn prob_missed_allele(&mut self, value: LogProb) -> &mut Self

Probability that the read/read-pair comes from an unknown allele at an unknown true locus (in case it is mismapped). This should usually be set as the product of the maxima of prob_ref and prob_alt per read.

pub fn prob_sample_alt(&mut self, value: LogProb) -> &mut Self

Probability to sample the alt allele

pub fn forward_strand(&mut self, value: bool) -> &mut Self

Observation relies on forward strand evidence

pub fn reverse_strand(&mut self, value: bool) -> &mut Self

Observation relies on reverse strand evidence

pub fn evidence(&mut self, value: Evidence) -> &mut Self

Type of evidence.

pub fn build(&self) -> Result<Observation, String>

Builds a new Observation.

Errors

If a required field has not been initialized.

Trait Implementations

impl Default for ObservationBuilder

fn default() -> ObservationBuilder

Returns the "default value" for a type.

impl Clone for ObservationBuilder

fn clone(&self) -> ObservationBuilder

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.