Struct varlociraptor::estimation::alignment_properties::InsertSize

pub struct InsertSize {
    pub mean: f64,
    pub sd: f64,
}

Expected insert size in terms of mean and standard deviation. This should be estimated from unsorted(!) bam files to avoid positional biases.

Fields

mean: f64

sd: f64

Methods

impl InsertSize

pub fn from_samtools_stats<R: Read>(
    samtools_stats: &mut R
) -> Result<InsertSize, Box<dyn Error>>

Obtain insert size from samtools stats output.

Trait Implementations

impl Default for InsertSize

fn default() -> InsertSize

Returns the "default value" for a type.

impl Clone for InsertSize

fn clone(&self) -> InsertSize

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Copy for InsertSize

impl Debug for InsertSize

fn fmt(&self, f: &mut Formatter) -> Result

Formats the value using the given formatter.

impl Serialize for InsertSize

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error> where
    __S: Serializer, 

Serialize this value into the given Serde serializer.

impl<'de> Deserialize<'de> for InsertSize

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error> where
    __D: Deserializer<'de>, 

Deserialize this value from the given Serde deserializer.