List of all items
Structs
- calibrate::Calibration
- database::DigestConfig
- database::PeptideDb
- database::TheoPeptide
- digest::DigestParams
- digest::Fasta
- digest::Peptide
- group::ProteinGroup
- im::ImModel
- input::Feature
- input::FeatureMatrix
- joint::Evidence
- joint::Match
- joint::Observation
- long_input::Bundle
- long_input::Run
- matching::MatchConfig
- matching::Pfm
- protein::ProteinConfig
- protein::ProteinId
- quant::directms1::Analysis
- quant::directms1::Config
- quant::directms1::Dataset
- quant::directms1::InputPeptide
- quant::directms1::Peptide
- quant::directms1::Protein
- quant::directms1::input::InputHash
- quant::directms1::input::Reader
- quant::directms1::input::ReferenceOptions
- quant::directms1::input::Row
- quant::directms1::rng::PythonRandom
- quant::directms1::uno_adapter::AdmissionAudit
- quant::directms1::uno_adapter::AdmissionPolicy
- quant::directms1::uno_adapter::RunAudit
- rt::RtModel
- rt_cnn::RtCnn
- rt_mlp::RtMlp
- score::PeptideHit
- score::ScoreConfig
- score::ScoreResult
Enums
- decoy::DecoyMethod
- digest::ModSpecificity
- digest::Position
- quant::directms1::uno_adapter::IntensityKind
- quant::directms1::uno_adapter::PeptideConfidence
- quant::directms1::uno_adapter::Reduction
Functions
- cell_evidence::select
- decoy::generate
- digest::digest
- group::build_groups
- group::members_by_leading
- im::im_features
- im::read_im2deep_csv
- im::soft_residuals
- joint::best_deviation
- joint::best_match
- joint::calibration_rt
- joint::evidence
- joint::restrict_observations
- long_input::file_sha
- mass::neutral_mass
- mass::residue
- matching::match_features
- matching::match_features_topk
- quant::directms1::analyze
- quant::directms1::input::reference
- quant::directms1::order::argsort
- quant::directms1::output::write
- quant::directms1::output::write_with_admission
- quant::directms1::stats::binomial_score
- quant::directms1::stats::calibrate
- quant::directms1::stats::mean
- quant::directms1::stats::median
- quant::directms1::stats::quantile
- quant::directms1::stats::ttest
- quant::directms1::uno_adapter::load
- quant::directms1::uno_adapter::load_with_policy
- quant::feature_winners
- quant::group_abundance
- quant::profile_reassign
- quant::resolve_feature_competition
- rt::read_label_tsv
- rt::rt_features
- rt_cache::predict_many_cached
- rt_cache::with_memory_cache
- score::score
- seed_mix