Struct umgap::rmq::rtl::RTLCalculator

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pub struct RTLCalculator {
    pub root: TaxonId,
    pub ancestors: Vec<Option<TaxonId>>,
}
Expand description

Struct capable of calculating the MRL of a list of nodes in a TaxonTree

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§root: TaxonId

The root node.

§ancestors: Vec<Option<TaxonId>>

Contains the parent for each node (to easily get from a node to the root). Nodes are indexed by their id.

Implementations§

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impl RTLCalculator

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pub fn new(root: TaxonId, taxons: &TaxonList) -> Self

Constructs an RTLCalculator.

§Arguments:
  • root - the root of the taxon tree
  • taxons - all taxons in the taxon tree, indexed by their id.

Trait Implementations§

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impl Aggregator for RTLCalculator

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fn aggregate(&self, taxons: &HashMap<TaxonId, f32>) -> Result<TaxonId>

Returns the taxon with the MRL for a given list of taxons.

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fn counting_aggregate(&self, taxons: &[TaxonId]) -> Result<TaxonId>

Aggregates a list of taxons into a resulting taxon id.
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impl MultiThreadSafeAggregator for RTLCalculator

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