Expand description
Contains the implementation of several programs used by the Unipept pipeline.
Modules§
- agg
- Defines aggregation operations over a taxon tree.
- commands
- The subcommands of the umgap command.
- dna
- Module for DNA related code.
- errors
- Defines the possible errors in Unipept.
- io
- I/O operations to different formats.
- rank
- Represents the rank of a Taxon
- rmq
- Implements aggregation operations using [Range Minimum Query] (https://en.wikipedia.org/wiki/Range_minimum_query) (RMQ)
- taxon
- Defines operations and data structures over taxons.
- tree
- Defines aggregation operations using only the tree structure.
- utils
- Some utils.
Constants§
- PKG_
AUTHORS - The authors
- PKG_
NAME - The package name
- PKG_
VERSION - The current version