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use std::fs::{File}; use std::io::{BufReader}; use byteorder::{WriteBytesExt}; #[cfg(feature = "use_nifti")] use nifti::NiftiHeader; use {Affine, Affine4, ArraySequence, Translation}; use affine::get_affine_and_translation; use cheader::{CHeader, Endianness}; type Scalar = (String, ArraySequence<f32>); type Property = (String, Vec<f32>); #[derive(Clone)] pub struct Header { c_header: CHeader, pub affine4: Affine4, pub affine: Affine, pub translation: Translation, pub nb_streamlines: usize, pub scalars: Vec<Scalar>, pub properties: Vec<Property> } impl Header { #[cfg(feature = "use_nifti")] pub fn from_nifti(h: &NiftiHeader) -> Header { let c_header = CHeader::from_nifti( h.dim, h.pixdim, h.srow_x, h.srow_y, h.srow_z); let affine4 = c_header.get_affine(); let (affine, translation) = get_affine_and_translation(&affine4); Header { c_header, affine4, affine, translation, nb_streamlines: 0, scalars: vec![], properties: vec![] } } pub fn read(reader: &mut BufReader<File>) -> (Header, Endianness) { let (c_header, endianness) = CHeader::read(reader); let affine4 = c_header.get_affine(); let (affine, translation) = get_affine_and_translation(&affine4); let nb_streamlines = c_header.n_count as usize; let scalars = c_header.get_scalars_name().into_iter().map( |scalar| (scalar, ArraySequence::empty()) ).collect(); let properties = c_header.get_properties_name().into_iter().map( |property| (property, vec![]) ).collect(); let header = Header { c_header, affine4, affine, translation, nb_streamlines, scalars, properties }; (header, endianness) } pub fn write<W: WriteBytesExt>(&self, writer: &mut W) { self.c_header.write(writer); } } impl Default for Header { fn default() -> Header { Header { c_header: CHeader::default(), affine4: Affine4::identity(), affine: Affine::identity(), translation: Translation::zeros(), nb_streamlines: 0, scalars: vec![], properties: vec![] } } } impl PartialEq for Header { fn eq(&self, other: &Header) -> bool { self.affine == other.affine && self.translation == other.translation && self.nb_streamlines == other.nb_streamlines && self.scalars == other.scalars && self.properties == other.properties } }