Crate tikhonov 

Tikhonov: pure-Rust Harmony2 single-cell integration.

Re-exports

pub use config::HarmonyConfig;

pub use error::HarmonyError;

pub use harmony::HarmonyResult;

pub use harmony::run_harmony;

pub use history::HarmonyHistory;

pub use history::HistoryEntry;

pub use phi::Phi;

Modules

cluster

Soft-clustering E-step (update_r_block) and M-step (update_y).

config

Hyperparameters for crate::run_harmony.

correct

Mixture-of-experts ridge regression correction.

embed

Cosine embedding helpers and kmeans++ centroid initialisation.

error

Error types for the tikhonov crate.

harmony

Top-level run_harmony driver.

history

Convergence diagnostics emitted by crate::run_harmony.

objective

Kmeans + entropy + cross-entropy objective, matching harmony::compute_objective in harmony-R 1.2.4.

phi

One-hot design matrix for batch covariates.