Module occupancy
Source - energy_landscape
- Scans both strands of a sequence with an energy matrix to compute binding energies
- occupancy_landscape
- Computes the occupancy landscape by scanning sequence with the energy matrix
- read_pwm_files
- Reads Position Weight Matrices (PWMs) from a MEME format file
- read_pwm_to_ewm
- Reads Position Weight Matrices (PWMs) from a MEME format file and converts them to Energy Weight Matrices (EWMs)
- total_landscape
- Computes the occupancy landscape for multiple transcription factors