Crate taxonomy

Re-exports

pub use errors::Error;

pub use errors::ErrorKind;

Modules

errors

gtdb

json

ncbi

newick

phyloxml

Structs

GeneralTaxonomy

The type that is returned when loading any taxonomies through that library. It include 2 implementations of the Taxonomy trait: one using strings as ids (easier to use but slower) and one using internal indices (harder to use but faster). Most fields are public for flexibility reason.

Enums

TaxRank

A taxonomic rank. For example, a species or phylum.

Traits

Taxonomy

The trait to implement for each form we implement. It does include some default implementations for a few functions as well as a way to iterate through it, starting with the specified node.

Functions

prune_away

Return a tree with these tax_ids and their children removed.

prune_to

Return a tree containing only the given tax_ids and their parents.